Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0944
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.16 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.0  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   2.0  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   3.5  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   4.7  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.7  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    26   6.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   6.1  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    25   8.1  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   8.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   8.1  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -1

Query: 107 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 3
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 502 SNQPPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 633
           ++ PP  S+   S  S   +P + P +P  L    QP + V+ P
Sbjct: 141 TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 449 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 336
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 497 RCQINLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRL 652
           R  +N Q+ L  R+    +N  +E+   + +   AE+    E + +LV+NRL
Sbjct: 145 RWTVNYQVKLI-RDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRL 195


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 32/159 (20%), Positives = 64/159 (40%)
 Frame = -1

Query: 503 DIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*N 324
           D  +S  SSD        + D S S S+   +  S GS+    ++ +++   S  D   +
Sbjct: 179 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD-SSSSSSSSESESSSEDNDSS 237

Query: 323 SGNSQD*VESGADVADTTQMQGAKSSALTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAA 144
           S +S    ES ++ +D++       S  +S         SD+       +  S    S+ 
Sbjct: 238 SSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSE 297

Query: 143 LNNSPISLNKFEITMSRMR*ELGSKSTSRCGTADTQARA 27
            ++S  S +  + + S    E G+ +T    + +  A++
Sbjct: 298 DSDSTSSSSDSDSSSSS---EDGNSNTDTTTSGEVSAQS 333


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 476 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 357
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 342 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVKST 512
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K  
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKL 379

Query: 513 SKSI 524
             +I
Sbjct: 380 EGTI 383


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -2

Query: 535 ASEEIDLEVDLTSPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMR 359
           A  E  L +D+TS ++      S+  +    ++    S+  FSR+ PPE+K+    L   
Sbjct: 115 AQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKC 174

Query: 358 ISPSAEPTDAETLGTARTKLSRV 290
               +  +  + L  A+ +L+ V
Sbjct: 175 WKEKSLTSSCKFLFEAKERLTSV 197


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 473 HRSCNNYWRCQINLQINLFGREVGPAVNN 559
           H S  N   C+I+ + N   +E+ P +NN
Sbjct: 37  HGSLRNSRSCRIDAKSNTLTKEIFPKINN 65


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 446 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 342
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 535 RSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTCESKINYGLLK 708
           + + SR   P  + C    L+++G  C+G     +H+    + SN+      ++   K
Sbjct: 20  KPFRSRTPSPEREYCSDCPLQAKGSACNGNSHSLKHETNGASSSNNNVAKSSSHDSFK 77


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = -1

Query: 458 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 291
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 159 ERISRSQQFTDFIEQV*DHDVKDA 88
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 524  LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 646
            +  R++GP V  F+ K+P  L +   ++  + + V +LV+N
Sbjct: 972  IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 496 AMSNQPPNQSLRTRSWTSRQQLPRED 573
           +M N PP    R  SWT ++  PRED
Sbjct: 598 SMLNLPPEVIRRKGSWTGKKD-PRED 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,359
Number of Sequences: 5004
Number of extensions: 45659
Number of successful extensions: 155
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)