Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0944
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0204 + 1539859-1540158 30 1.6
04_04_1110 + 30973202-30973870 30 2.1
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 29 4.8
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 4.8
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.4
05_03_0478 - 14526180-14526578 28 6.4
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 28 8.5
01_06_0034 + 25769436-25769701,25769749-25769887 28 8.5
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 172 YAGSWSPPGASDIINFSGRVTDVKADD 252
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>04_04_1110 + 30973202-30973870
Length = 222
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 493 IVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 338
+ + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 103 LAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 28.7 bits (61), Expect = 4.8
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -2
Query: 580 DRDLL*EVVDGWSNFASEEID----LEVDLTSPIVIAAPMSLTMMLSARETEAVASATTF 413
+ D+ VDGW FA + LE+ L +P+ P A +T A S T
Sbjct: 117 EADITLSRVDGWLRFAERHVKGSFILELPLVAPVAARTPRRGEARSQAADT-AATSVTDD 175
Query: 412 SRASPPEAKDLRTRLKMRISPSAEPTDAETLGTA 311
A+ P +++ +++ S AE T + TLG A
Sbjct: 176 GEAAAPADEEV-VVVELPRSTRAE-TMSLTLGYA 207
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 4.8
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = -1
Query: 503 DIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADFSFSGTD*C* 327
D+ + CSSD + + D S NDV SG + +D ++ ++S G++ C
Sbjct: 427 DLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEYSSGGSE-CD 485
Query: 326 N--SGNSQD*VESGADVADTTQMQGAKSSALTSVTRPEKLMMSDAP----GGLQEPA*PS 165
+ N+ +G D + A++ V R + +S P E PS
Sbjct: 486 DKVKRNNSGKASNGNDKGFQPPKKAARTE--HGVLREDTNQISSVPPVENTSQMESNDPS 543
Query: 164 RRRGSAALNNSPISLNKFEITMSRMR*ELGSKSTSRCGTADT---QARARAKMKA 9
R+ + N S + K + S R + KS+SR + T +A AR + A
Sbjct: 544 HRKLHES-NGSTDQIEKSNVRASSSRAKFMEKSSSRNKSKKTLLGRASARRDLSA 597
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 58 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 153
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 538 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 642
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 476 RSCNNYWRCQINLQINLFGREVGPAVNNFLEKIPV 580
R N Y R +N + +F + P+ NNF ++PV
Sbjct: 252 RRANPYNRGMVNNFLEIFCTAIPPSKNNFRARVPV 286
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 476 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 366
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,660,325
Number of Sequences: 37544
Number of extensions: 347490
Number of successful extensions: 1173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -