Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0944
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   32   0.40 
SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.8  
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)                 29   2.8  
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.8  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.8  
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   2.8  
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)           28   8.6  
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)                      28   8.6  

>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 476 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 300
           DV+D D V +GD  G+ + +DV  G S G +    +++  D S +G +   N  N  D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224

Query: 299 ESGADVAD 276
            + A+  D
Sbjct: 225 SNVANDGD 232


>SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 967

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 154 PLRRDGYAGSWSPPGASDIINFSGRVTDVKADDLAPCICVVSATSAPDS 300
           P+   GY G+  P G   I  F+G   +    +L  C+  V +T  P S
Sbjct: 844 PIGPQGYNGTQGPKGDQGIQGFNGTKGESGVGNLTDCVFKVISTDVPVS 892


>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1505

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409


>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 230

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 87  TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165


>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
          Length = 1283

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421


>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 8   TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67

Query: 450 --ADNIIVSDIGAAITIGD 500
              ++I V      I +GD
Sbjct: 68  METNDIAVRPAKGQIILGD 86


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 389 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 448

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 449 MEKNDIAVRPAKGQIILGD 467


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 515 GG*FDI-ANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 369
           GG  DI  +S+   + TD D  + +G+GSGS  N +  G  +GS   +++A
Sbjct: 689 GGEDDILVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739


>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 577

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 76   PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 174
            P SQRIL +++    LFN+   L  AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192


>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317


>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1212

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +3

Query: 291 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 449
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411

Query: 450 AD--NIIVSDIGAAITIGD 500
            +  +I V      I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430


>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 440 RLPRRQHHCQ*HRSCNNYWRCQINLQINLFGREVGPAVNNF-LEKIPVYLTDY 595
           R  + QHH   H   ++  RCQI+++    G E+   VN    +    Y T+Y
Sbjct: 126 RAEKHQHHQHHHIKTDSQERCQIDVESIKTGLEIAEQVNPMDSDSEEEYATEY 178


>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
          Length = 207

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 300 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 476
           N+  +  R +AS G   + EIR+    + +   GGLAL  +   AT    L   ++VS +
Sbjct: 12  NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71

Query: 477 GAA 485
           G A
Sbjct: 72  GLA 74


>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
          Length = 225

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 553 DGWSNFASEEIDLEVDLTSPIVIAAPMS--LTMMLSARETEAVASATTFSRA 404
           D W   A+   ++ V   SP   A PMS   ++  S+ +T  V+S+ T S A
Sbjct: 90  DDWKEIAAPPNEITVTTPSPSSTATPMSSVTSIQSSSAKTTQVSSSVTTSDA 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,767,275
Number of Sequences: 59808
Number of extensions: 395095
Number of successful extensions: 1247
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)