Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0944
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF000193-1|AAB52891.1| 715|Caenorhabditis elegans Hypothetical ... 29 4.4
U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeo... 28 5.8
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 28 5.8
AF068721-9|AAC19265.1| 570|Caenorhabditis elegans Hypothetical ... 28 5.8
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 7.6
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 7.6
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -2
Query: 502 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 323
++P+V LT SAR + AS +P +++R S + P T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212
Query: 322 LGTARTKLSRVP 287
GT+ SR+P
Sbjct: 213 PGTSSNHRSRLP 224
>AF000193-1|AAB52891.1| 715|Caenorhabditis elegans Hypothetical
protein T20B6.2 protein.
Length = 715
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/111 (20%), Positives = 52/111 (46%)
Frame = -2
Query: 703 RDHNLFLIHKYRSSNLQ*SVDDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEE 524
RD + Y SSN+ D+L ++L+N L +V + ++ ++DG + S++
Sbjct: 57 RDAPVLYFSIYNSSNIIIISVDKLTNILENMQSLARLVNGISLEI--GLMDG--SIPSDD 112
Query: 523 IDLEVDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTR 371
E+ P+ + +S+ +++ + + + + ++SP E L R
Sbjct: 113 AIAELLHMGPVKLQELISMDTAAASKSIKDLGTLSGTLQSSPAEVTTLENR 163
>U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeobox
protein 19,isoform b protein.
Length = 199
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 559 VVDGWSNFASEEIDLEV---DLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 389
V+DGW+N A+ ++ + DL +P ++ M L +SAR+ + S + P +A
Sbjct: 43 VIDGWTNMATSQLAMFAIANDLRTPTLVELQMLLG--VSARKHDYKRSRKSVCERKPRQA 100
Query: 388 KDLR 377
R
Sbjct: 101 YSAR 104
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 451 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVP 287
A + E +S + ++ EAK + K + PSA +D + T T +++ P
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEP 743
>AF068721-9|AAC19265.1| 570|Caenorhabditis elegans Hypothetical
protein ZK1055.7 protein.
Length = 570
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 397 PEAKDLRTRLKMRISPSAEPTDAETLGT 314
P + D + R+K+ +SP+A P DAE GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 586 QVDRDLL*EVVDGWSNFASEEIDLEVD 506
Q +RD EV+D F EE+D EVD
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEVD 54
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 586 QVDRDLL*EVVDGWSNFASEEIDLEVD 506
Q +RD EV+D F EE+D EVD
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEVD 54
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 25 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 168
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 25 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 168
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,410
Number of Sequences: 27780
Number of extensions: 272488
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -