Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0944
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   3.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.8  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 439 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 320
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 493  LAMSNQPPNQSLRTRSWTSRQQLPREDP 576
            L + + PP  S  T S   +QQLP   P
Sbjct: 1263 LMLQHAPPAYSCGTVSVPQQQQLPPSSP 1290


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 7  KAFIFALALACVSAV 51
          +AFI++LAL C+ A+
Sbjct: 7  QAFIYSLALLCLHAI 21


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 7  KAFIFALALACVSAV 51
          +AFI++LAL C+ A+
Sbjct: 7  QAFIYSLALLCLHAI 21


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 625 RRPTRHQQITVNYSNDTCESKINYGLLK 708
           R PT HQ++     N    +  N+G+ K
Sbjct: 29  RAPTGHQEMQGKEKNSASLNSENFGIFK 56


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 433 VASATTFSRASPPEAKDLRTRLKMRISP 350
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 610 PCSGVRRPTRHQQITVNYSNDTCESKINY 696
           P   ++   RH ++    + D C+ +INY
Sbjct: 200 PMPTLKGDGRHMEVIKIKNFDNCDQRINY 228


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 449 EGDGSGSLSNDVLKGKSSGSERP 381
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 434 RFR-LPRRQHHCQ*HRSCNNYWRCQINLQ 517
           +FR L  RQ H   H S  NY R    +Q
Sbjct: 187 QFRVLGHRQRHSTIHLSTGNYSRLACEIQ 215


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 479 SCNNYW 496
           SCNNYW
Sbjct: 100 SCNNYW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,071
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)