Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0941
         (529 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A0U7 Cluster: ATP-dependent DNA helicase recG; n=29; ...    32   9.4  

>UniRef50_Q8A0U7 Cluster: ATP-dependent DNA helicase recG; n=29;
           Bacteroidetes/Chlorobi group|Rep: ATP-dependent DNA
           helicase recG - Bacteroides thetaiotaomicron
          Length = 698

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 178 G*SQFVVCNFDLSVFSLF-ICEYFPFKYV*TDTIYFI 285
           G  +  V N +L ++SL+ +  YFP+KYV    IY+I
Sbjct: 16  GPQKAAVLNKELEIYSLYDLIYYFPYKYVDRSRIYYI 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,784,894
Number of Sequences: 1657284
Number of extensions: 7435146
Number of successful extensions: 15688
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15686
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)