Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0941
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.0  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   9.2  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   9.2  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 132 LKFLFYEIKYLYCGTNTYT 76
           L +LF  +K LY GT TY+
Sbjct: 83  LAYLFINVKALYEGTQTYS 101


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 257 YLNGKYSQINKLKTLRSKL-HTT 192
           Y +G YSQI  ++  RS+L H+T
Sbjct: 516 YEDGAYSQIEDMRNFRSRLDHST 538


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 413 SLINIEFKL*IQNLKLKRLNLYFRL*LSFCLPDTRV 306
           S+ N+E K  ++++  K L LYF    S  L +T V
Sbjct: 178 SMDNVEIKPLVRHVLSKELQLYFERITSALLDETNV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,991
Number of Sequences: 5004
Number of extensions: 35614
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)