Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0941
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626...    28   5.3  

>06_03_1328 +
           29361248-29361502,29361903-29362453,29362585-29362671,
           29362910-29362966,29363069-29363307,29364190-29364308,
           29364397-29364483,29365511-29365567
          Length = 483

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 374 LKLKRLNLYFRL*LSFCLPDTRVFCIFYYRIKYIVSVHTYL 252
           LKLK +N+Y RL     +P T + C+ Y+  + +V +  +L
Sbjct: 249 LKLKDVNMYLRL----AIPSTFMTCLEYWAFEMVVLLAGFL 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,840
Number of Sequences: 37544
Number of extensions: 170024
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)