Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0939
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    26   0.24 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   5.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.1  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 89  HYRCCAPIPLLAPVIKTILLEKLISR 12
           H +C  P P+ +PV K +  E L +R
Sbjct: 34  HQKCPKPAPIYSPVSKPVSFESLPNR 59


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 331 DFRRSDEHKPKSFCIDNQRGHT 396
           DF+ S  HK  + C    R HT
Sbjct: 291 DFQPSQVHKQTAICFKAPRYHT 312


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 663 LADFLKGKLSCIIL*CFWNPSCFE 592
           +AD L G ++CI      +P+C E
Sbjct: 90  VADILSGAIACIGFSWIASPACTE 113


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 375 NTEALRFVFITSSKVSMKPSDLMSF 301
           NT+ L+++  + +++S  P+DL  F
Sbjct: 294 NTKKLQWLDTSHNRISEIPNDLFRF 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,339
Number of Sequences: 336
Number of extensions: 2701
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)