Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0939
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.0  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 325 HRDFRRSDEHKPKSFCIDNQRGHTTP 402
           H  F+++D+H PK F   +  G+  P
Sbjct: 73  HGGFKKTDKHPPKDFGDVDSLGNLDP 98


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 325 HRDFRRSDEHKPKSFCIDNQRGHTTP 402
           H  F+++D+H PK F   +  G+  P
Sbjct: 89  HGGFKKTDKHPPKDFGDVDSLGNLDP 114


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 16 EMSFSSKIVLITGASRGIG 72
          E ++  ++ L+TGA+ GIG
Sbjct: 2  EQNWIDEVALVTGANSGIG 20



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +2

Query: 254 IGKLDILINNAGILKENDIKSEGFIETFDEVMNTNL 361
           +G +DILINNA I  +  ++++  ++ + ++ + NL
Sbjct: 82  LGAIDILINNATINIDVTLQNDEVLD-WKKIFDINL 116


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 544 GIRANTVSPGPVETDIFE 597
           G +AN+  PG  E DI E
Sbjct: 354 GSKANSPFPGSTEADIIE 371


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 113 YISPFFSEHYRCCAPIPLLAPVIKTIL 33
           Y+     E  R   P+PL+A  IKT L
Sbjct: 399 YLERCLLETLRMYPPVPLIAREIKTDL 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,400
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)