Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0932
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.28 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = -1

Query: 264 FLSSVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSP------APATMCSPDSSLIHCTM 103
           F+S +  +D T    L+G QA +     R++ +  S       A +     + SL+H   
Sbjct: 409 FISDIPLHDATRDVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSAEREKNVSLLHLIF 468

Query: 102 GSDLARRL 79
             D+A+RL
Sbjct: 469 PPDIAKRL 476


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 282 ETELVRFLSSVSRYDTTGSDFLIGMQAWSS 193
           + E+   + +V R + TG+   IG   WS+
Sbjct: 351 DQEVAGVMRAVKRCNATGAFSWIGSDGWSA 380


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 325 QPMPDGLPEDIDEGRVNPR 381
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 281 SQSRPTSTTVCS*RLSPCLMVCQRT 355
           +Q+ P +TT     + PC  +C+ T
Sbjct: 218 AQNGPFNTTTIFVPVKPCPWICELT 242


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 81  NVWLNLTPWCSV 116
           N WL  T WC V
Sbjct: 110 NRWLFTTDWCDV 121


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 325 QPMPDGLPEDIDEGRVNPR 381
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,872
Number of Sequences: 438
Number of extensions: 2352
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)