Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0932
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 133 4e-32
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 97 6e-21
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 94 4e-20
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 94 4e-20
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 94 4e-20
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 63 9e-11
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 2e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 2e-06
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 0.80
At2g47500.1 68415.m05929 kinesin motor protein-related 30 0.80
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 29 1.1
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 28 2.4
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 28 3.2
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 28 3.2
At1g70100.3 68414.m08067 expressed protein 28 3.2
At1g70100.2 68414.m08066 expressed protein 28 3.2
At1g70100.1 68414.m08065 expressed protein 28 3.2
At4g27460.1 68417.m03946 CBS domain-containing protein 27 4.2
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ... 27 4.2
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 27 5.6
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 27 5.6
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 27 5.6
At5g17300.1 68418.m02026 myb family transcription factor similar... 27 7.4
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 27 7.4
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 26 9.8
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 133 bits (322), Expect = 4e-32
Identities = 70/99 (70%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Frame = +2
Query: 2 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICL 181
FSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C EESGEHIVAGAGELHLEICL
Sbjct: 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICL 542
Query: 182 KDLEEDH-ACIPIKKSDPVVSYRETELRNRTSSVSQSRP 295
KDL++D I KSDPVVS+RET T +V P
Sbjct: 543 KDLQDDFMGGAEIIKSDPVVSFRETVCDRSTRTVMSKSP 581
Score = 71.3 bits (167), Expect = 3e-13
Identities = 30/58 (51%), Positives = 45/58 (77%)
Frame = +1
Query: 259 EESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRAR*LTEKYEYN 432
+ S + +SKSPNKHNRL+M+A+PM +GL E ID+GR+ PRDD K R++ L E++ ++
Sbjct: 570 DRSTRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWD 627
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 96.7 bits (230), Expect = 6e-21
Identities = 43/84 (51%), Positives = 62/84 (73%)
Frame = +2
Query: 2 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICL 181
F VSP +RVA+EP +PAD+ L++GL+ L ++DP V+ GEH++A AGE+HLE C+
Sbjct: 533 FQVSPTLRVAIEPSDPADMSALMKGLRLLNRADPFVEITVSARGEHVLAAAGEVHLERCV 592
Query: 182 KDLEEDHACIPIKKSDPVVSYRET 253
KDL+E A + ++ S P+VSYRET
Sbjct: 593 KDLKERFAKVNLEVSPPLVSYRET 616
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 93.9 bits (223), Expect = 4e-20
Identities = 43/98 (43%), Positives = 66/98 (67%)
Frame = +2
Query: 2 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICL 181
F+ PVV+ A EP NP++LPK+VEGL++++KS P+ EESGEH + G GEL+L+ +
Sbjct: 582 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSII 641
Query: 182 KDLEEDHACIPIKKSDPVVSYRETELRNRTSSVSQSRP 295
KDL E ++ + +K +DPVVS+ ET + + + P
Sbjct: 642 KDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETP 679
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 259 EESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVN 375
E S C +++PNK N+L M A+P+ GL EDI+ G V+
Sbjct: 668 ESSSMKCFAETPNKKNKLTMIAEPLDRGLAEDIENGVVS 706
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 93.9 bits (223), Expect = 4e-20
Identities = 43/98 (43%), Positives = 66/98 (67%)
Frame = +2
Query: 2 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICL 181
F+ PVV+ A EP NP++LPK+VEGL++++KS P+ EESGEH + G GEL+L+ +
Sbjct: 596 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 655
Query: 182 KDLEEDHACIPIKKSDPVVSYRETELRNRTSSVSQSRP 295
KDL E ++ + +K +DPVVS+ ET + + + P
Sbjct: 656 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETP 693
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 259 EESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVN 375
E S C +++PNK N++ M A+P+ GL EDI+ G V+
Sbjct: 682 ESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS 720
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 93.9 bits (223), Expect = 4e-20
Identities = 43/98 (43%), Positives = 66/98 (67%)
Frame = +2
Query: 2 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICL 181
F+ PVV+ A EP NP++LPK+VEGL++++KS P+ EESGEH + G GEL+L+ +
Sbjct: 596 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 655
Query: 182 KDLEEDHACIPIKKSDPVVSYRETELRNRTSSVSQSRP 295
KDL E ++ + +K +DPVVS+ ET + + + P
Sbjct: 656 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETP 693
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 259 EESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVN 375
E S C +++PNK N++ M A+P+ GL EDI+ G V+
Sbjct: 682 ESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS 720
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 62.9 bits (146), Expect = 9e-11
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 14 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELHLEICLKDL 190
PV++VA+EPK AD+ K+ GL +LA+ DP +EE + ++ G GELHLEI + L
Sbjct: 493 PVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMNQTVIEGMGELHLEIIVDRL 552
Query: 191 EEDHACIPIKKSDPVVSYRET 253
+ + + P V+YRE+
Sbjct: 553 KREFK-VEANVGAPQVNYRES 572
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 14 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 190
PV+ +AV+P + + + L R K DP + ++ ESG+ I++G GELHL+I ++ +
Sbjct: 461 PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERM 520
Query: 191 EEDHACIPIKKSDPVVSYRET 253
++ + P V++RET
Sbjct: 521 RREYK-VDATVGKPRVNFRET 540
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 14 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 190
PV+ +AV+P + + + L R K DP + ++ ESG+ I++G GELHL+I ++ +
Sbjct: 461 PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERM 520
Query: 191 EEDHACIPIKKSDPVVSYRET 253
++ + P V++RET
Sbjct: 521 RREYK-VDATVGKPRVNFRET 540
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 262 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 357
E + LCL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 5 SVSPVVRVAVEPKNPADLPKLVEGL 79
S+S +VR + K P D+PKL+E L
Sbjct: 229 SLSTLVRAVLSDKKPEDVPKLIESL 253
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 214 NQEV*PCRVVP*DRAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 345
NQE P V D + +L +SKSP H+ L +K+ P +G+
Sbjct: 217 NQETPPEFVSDQDLGSKEKKLDISKSPTPHDVLPLKSSPKGNGM 260
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 116 INEESGEHIVAGAGELHLEICLKDLEEDH 202
I EE G G G+ ICL++ E+DH
Sbjct: 63 IKEEEGGREEEGGGKRFCPICLEEYEDDH 91
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 149 GAGELHLEICLKDLEEDHACIPIKK 223
G E+ ICL++LE+ H I IKK
Sbjct: 111 GFDEIGCSICLEELEDGHEIIRIKK 135
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 253 GLTVRHDRVRLLDWNASMVLLKILKTDLKMEFSSTSDNV 137
G TV+ DRV W +++ +++TD +EF N+
Sbjct: 348 GGTVKEDRVSEWLWTLHRIVVDVVRTDSHLEFYEDPGNL 386
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 107 VQCINEESGEHIVA-GAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETELRNRTSSVS 283
V C+ EE E + + GE+ E +K+ +++ PIKK+D V +++ V+
Sbjct: 200 VICMKEEVKEDVPSKDTGEMS-ETLMKETKKEKDHNPIKKTDKNVRTNHMRASPKSNQVT 258
Query: 284 QSRPTSTTVCS*RLSP 331
+ TS V + P
Sbjct: 259 KKPVTSKVVSGRKTQP 274
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 107 VQCINEESGEHIVA-GAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETELRNRTSSVS 283
V C+ EE E + + GE+ E +K+ +++ PIKK+D V +++ V+
Sbjct: 200 VICMKEEVKEDVPSKDTGEMS-ETLMKETKKEKDHNPIKKTDKNVRTNHMRASPKSNQVT 258
Query: 284 QSRPTSTTVCS*RLSP 331
+ TS V + P
Sbjct: 259 KKPVTSKVVSGRKTQP 274
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 107 VQCINEESGEHIVA-GAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETELRNRTSSVS 283
V C+ EE E + + GE+ E +K+ +++ PIKK+D V +++ V+
Sbjct: 200 VICMKEEVKEDVPSKDTGEMS-ETLMKETKKEKDHNPIKKTDKNVRTNHMRASPKSNQVT 258
Query: 284 QSRPTSTTVCS*RLSP 331
+ TS V + P
Sbjct: 259 KKPVTSKVVSGRKTQP 274
>At4g27460.1 68417.m03946 CBS domain-containing protein
Length = 391
Score = 27.5 bits (58), Expect = 4.2
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -1
Query: 273 LVRFLSSVSRYDTTG---SDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTM 103
L+ S+S Y T+ S+ ++ S RS+ +R + + A +C+P SSL+ M
Sbjct: 292 LMSLFDSLSSYSTSSGYSSEEEAPVRTTSYGRSMSSSARMARKSEAIVCNPKSSLM-AVM 350
Query: 102 GSDLARRLRPSTSLGRSAGFLG 37
+A R+ + + + F+G
Sbjct: 351 IQAVAHRVNYAWVVEKDGCFVG 372
>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 183
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 14 PVVRVAVEPKNPADLPKLVEGLKRLAK-SDPMVQCINEESGEHIV 145
P+++ V P N AD+ VE +K + S+ + +C+ EE E+++
Sbjct: 63 PIIKKVVVP-NRADIKTSVEEVKAIIDDSEALYECLIEEGEEYLL 106
>At3g06850.2 68416.m00813 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 23 RVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGE 160
+VA+ +P D+ K+ E L RLA D + +S E + G +
Sbjct: 128 KVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSK 173
>At3g06850.1 68416.m00812 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 23 RVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGE 160
+VA+ +P D+ K+ E L RLA D + +S E + G +
Sbjct: 128 KVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSK 173
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
gi:1654140 [Lycopersicon esculentum]
Length = 917
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 283 SKSPNKHNRLFMKAQPM-----PDGLPEDIDEGRVNPRDDFKTRAR*LTEKYEYNSY 438
SK+ N R+ ++QP PDG+ E ++ V+ R D K + Y+Y+ Y
Sbjct: 204 SKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYDVY 260
>At5g17300.1 68418.m02026 myb family transcription factor similar to
CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
profile PF00249: Myb-like DNA-binding domain
Length = 387
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 258 SSVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPAT 142
S S T GS+ L + + S +RSL +S S PA T
Sbjct: 157 SPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALT 195
>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
family protein (ATL6) contains Pfam profile: PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 398
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 149 GAGELHLEICLKDLEEDHACIPIKKSDPV 235
G GEL ICL + E+D + K D V
Sbjct: 122 GKGELECAICLNEFEDDETLRLLPKCDHV 150
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 171 SRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGF 43
S+ SPAP++ +SL++C GS L ++ +L RS F
Sbjct: 1970 SKLKSPAPSSFHERGNSLLNCLPGS-LTVAIKRGDNLKRSNAF 2011
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 168 RWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGDT 7
R++SP CS +H + S+++R P + S G + + + R GD+
Sbjct: 179 RYTSPGNPCSCSVSKLSVHHSSHSEISRTSSPFVNC--SVGSVSADSLRLNGDS 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,802,689
Number of Sequences: 28952
Number of extensions: 200898
Number of successful extensions: 650
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -