Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0931
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    30   0.007
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    30   0.007
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   2.6  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   4.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.007
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 7   WWFIFLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVE 162
           W   FLK+ ++ TV   +LG  V++K   +  TSQ  IK   T +Y N K++
Sbjct: 55  WGVKFLKVVTIITVFFVVLGAAVVSKGTTLFMTSQ--IKKNVTRAYCNKKID 104


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.007
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 7   WWFIFLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVE 162
           W   FLK+ ++ TV   +LG  V++K   +  TSQ  IK   T +Y N K++
Sbjct: 55  WGVKFLKVVTIITVFFVVLGAAVVSKGTTLFMTSQ--IKKNVTRAYCNKKID 104


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 60  AGKECTEQVQSGIRNKPSIHK 122
           AG   T +V +   NKP IHK
Sbjct: 311 AGWSATSRVFATFYNKPLIHK 331


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 27  NGFCRYCNSCFAGKECTEQVQSGI 98
           +G C   +SC A K C    +S I
Sbjct: 107 DGICCSQDSCHADKSCASDDKSPI 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,330
Number of Sequences: 336
Number of extensions: 1839
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)