Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0931
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 35 0.004
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 28 0.46
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.3
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 3.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 21 6.8
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.6
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 24 7.6
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 24 10.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 10.0
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 24 10.0
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 35.1 bits (77), Expect = 0.004
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 76 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNAL 228
LN +S + KFYST+S + + E SK + LNRPK LNA+
Sbjct: 33 LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAI 80
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 28.3 bits (60), Expect = 0.46
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 36 CRYCNSCFA-GKECTEQVQSGIRNKPSIHKVL 128
C+ CNS GK C+ + + R PSI +VL
Sbjct: 59 CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 3.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 338 STSRKRLLVTSDDDGSNVAVGVKIIDCLPSSTNNGLHRAFSAFGRFN*MSPTFFL 174
STS TS S+V+ +II SSTNN +H+ S + + PT ++
Sbjct: 80 STSTSSSSGTSVITASDVSASNEIIS---SSTNNSIHQQVSVVTEYVTIQPTTYV 131
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 231 QTIVCRTRKAVNDFDADSNIAAIIITGN 314
QT R A ++F A SN+A I + GN
Sbjct: 84 QTTYSLQRYATSNFSAHSNLATINLVGN 111
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 21.4 bits (43), Expect(2) = 6.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 278 GVKIIDCLPSSTNNGLHRAFSAFGR 204
G ++D N G + A+SAF +
Sbjct: 154 GKAVVDGFDLEVNKGTNTAYSAFAK 178
Score = 21.0 bits (42), Expect(2) = 6.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 350 LLNISTSRKRLLVTSDDDGSNVAVGV 273
LL+I + +DDDG+N A V
Sbjct: 114 LLSIGGYNGNFSLNNDDDGTNFAFQV 139
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 7.6
Identities = 15/73 (20%), Positives = 27/73 (36%)
Frame = +1
Query: 67 KNVLNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFV 246
K+ + V+ + +Y EN +EV K P+ C P+++
Sbjct: 22 KHEIQSAGTVALDNGVESPYYICVQVENQGIEVYHMKDERLFASCPLPEKTRFSCSPIYI 81
Query: 247 ELGRQSMILTPTA 285
+ G I T T+
Sbjct: 82 KEGNWHYIWTCTS 94
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 281 VGVKIIDCLPSSTNNGLHRAFSAFGR 204
V +K +D P+ N LH FSAFG+
Sbjct: 170 VFIKNLD--PAIDNKALHDTFSAFGK 193
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 31 ASVATVTRALLGKNVLNKCKVVSATSQASIKF 126
+S+AT+ + L +N C+V+ S ++K+
Sbjct: 504 SSIATLRQELAQVTEINSCRVLQHRSNPTLKY 535
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 398 IHEGNLFVCC*MYGLHLLN 342
IH+ +LF CC +G +N
Sbjct: 1156 IHDPSLFACCYQFGAVFVN 1174
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 383 LFVCC*MYGLHLLNISTSRKRLLVTSDDDGSNVAVGVKIIDCLPS 249
L+ CC + +L+N + R SD + + +KIID L S
Sbjct: 297 LYDCCQLLPTYLINRNLIRHSGWGLSDAESQIRKISLKIIDYLSS 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,792
Number of Sequences: 5004
Number of extensions: 30854
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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