Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0931
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 35 0.021
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 30 0.59
07_01_1151 - 10822616-10823863 30 0.59
10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107... 28 2.4
12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935... 28 3.1
08_01_0829 - 8051073-8051357,8051503-8051934 28 3.1
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 27 4.1
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 27 4.1
11_07_0017 - 27451548-27451913,27452000-27452812 27 5.5
09_02_0264 + 6422062-6422874,6422961-6423326 27 5.5
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 27 5.5
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857... 27 7.2
02_04_0642 + 24686792-24686913,24687027-24687090,24688282-246884... 26 9.5
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 130 STASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVEL 252
S S + I VE V ++ +NRPKALNAL +P+ V L
Sbjct: 5 SPDSGDLILVEPAKPGSRVAVVTINRPKALNALTRPMMVSL 45
Score = 34.3 bits (75), Expect = 0.036
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 195 SVKPPKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAFAAGADIKEMQTI 362
++ PK + ++ A DAD +AA+++ G +AF +G D+ + +
Sbjct: 27 TINRPKALNALTRPMMVSLAAAFRRLDADDGVAAVVLAGRGRAFCSGVDLTAAEEV 82
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 30.3 bits (65), Expect = 0.59
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 79 NKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLI-QLNRPKALNALCKPLFVELG 255
NK K+ SA + FY + + + ++ GL Q N+PKAL + CK F+E G
Sbjct: 236 NKSKIFSANPNKTCNFYRSWAPNTLNERMLSLV--FGLTNQSNKPKALKSSCKFEFLEHG 293
>07_01_1151 - 10822616-10823863
Length = 415
Score = 30.3 bits (65), Expect = 0.59
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 344 NISTSRKRLLVTSDDDGSNV-AVGVK-IIDCLPSSTN 240
N S SRKR LV+SDD+G + G K +I P STN
Sbjct: 342 NQSDSRKRKLVSSDDEGDDAEKTGNKGVIGKQPKSTN 378
>10_08_1007 -
22210263-22210400,22210506-22210547,22210626-22210727,
22212239-22212337,22212413-22212473,22213311-22213432,
22217700-22217786,22217958-22218041,22218141-22218220,
22218404-22218467,22218904-22218972,22219099-22219179,
22219626-22219694,22220108-22220140
Length = 376
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +3
Query: 186 RTHSVKPPKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAFAAGADI 344
RT + PK ++ + ++ D + +I+ G +AF AG D+
Sbjct: 44 RTLLMNRPKQLNALSSAMITGFLRCFTAYEEDEGVKLLIVKGKGRAFCAGGDV 96
>12_01_0945 +
9351915-9351929,9352221-9352386,9352903-9353024,
9353098-9353214,9356997-9357077,9357204-9357272,
9357727-9357790,9357988-9358067,9358164-9358247,
9358418-9358502,9359658-9359743,9359924-9360045,
9360841-9360901,9360981-9361166,9363622-9363723,
9363803-9363844,9363949-9364086
Length = 539
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +3
Query: 186 RTHSVKPPKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAFAAGADI 344
RT + PK ++ + ++ D + +I+ G +AF AG D+
Sbjct: 150 RTLVLNRPKQLNALSSAMITCFLRCFTAYEEDDGVKLLIVKGKGRAFCAGGDV 202
>08_01_0829 - 8051073-8051357,8051503-8051934
Length = 238
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 344 NISTSRKRLLVTSDDDGSNV 285
N S S KR LV SDD+G NV
Sbjct: 167 NQSDSHKRKLVLSDDEGDNV 186
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 RKAVNDFDADSNIAAIIITGN-EKAFAAGADIKEMQTIHSAAHKQVSFVN 398
R A+ AD+ +++ + K F AGAD+KE + + ++ FVN
Sbjct: 77 RSAIEKVKADATAKVVLLASSVPKVFCAGADLKERRLMSPCEVRE--FVN 124
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 332 SRKRLLVTSDDDGSNV 285
SRKR LV SDD+G NV
Sbjct: 186 SRKRKLVLSDDEGDNV 201
>11_07_0017 - 27451548-27451913,27452000-27452812
Length = 392
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 338 STSRKRLLVTSDDDGSN 288
S SRKR LV SDD+G N
Sbjct: 316 SDSRKRKLVLSDDEGDN 332
>09_02_0264 + 6422062-6422874,6422961-6423326
Length = 392
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 338 STSRKRLLVTSDDDGSN 288
S SRKR LV SDD+G N
Sbjct: 316 SDSRKRKLVLSDDEGDN 332
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 282 SNIAAIIITGNEKAFAAGADIKEMQTIHSAAHKQVSFVN 398
S++ AI++TG + F+ G DI S +SFVN
Sbjct: 47 SDVKAIVLTGAKGRFSGGFDINAFDKKPSKDCPVLSFVN 85
>11_04_0001 +
11984639-11984875,11984989-11985278,11985361-11985719,
11985797-11985984,11986058-11986247,11986497-11986631,
11986694-11986947
Length = 550
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 338 STSRKRLLVTSDDDGSN 288
S SRKR+LV SDD+G +
Sbjct: 124 SDSRKRMLVLSDDEGDD 140
>02_04_0642 +
24686792-24686913,24687027-24687090,24688282-24688401,
24688685-24688774,24688848-24688986,24689664-24689786,
24689884-24689942
Length = 238
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +3
Query: 174 QEECRTHSVKPPKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAFAAGADIKEM 353
++ C H P+G I + K++ND ++DS++ A +++ +K A + +E+
Sbjct: 83 EKYCLRHCFAIPEGFLTREDDIPAK--KSLNDGNSDSDLDAELVSLRKKLEDANNESEEL 140
Query: 354 QTIHSAAHKQ 383
Q S+ +Q
Sbjct: 141 QKELSSLERQ 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,197
Number of Sequences: 37544
Number of extensions: 210170
Number of successful extensions: 519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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