Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0931
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   6e-08
SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)                      34   0.049
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_38336| Best HMM Match : UCR_TM (HMM E-Value=4.6)                    27   4.3  
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   27   7.4  

>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +1

Query: 97  SATSQASIKFYSTA--SYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVEL 252
           SA+S    + + +A  SYE+I  E  G   NVG IQLNRPKALNALC  L  EL
Sbjct: 20  SASSLRYTRAFCSAKKSYEHILTETKGESNNVGFIQLNRPKALNALCNDLMYEL 73



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +3

Query: 207 PKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAFAAGADIKEMQTI 362
           PK        ++     A++ F+AD N+  I++TG  +AFAAGADIKEMQ +
Sbjct: 59  PKALNALCNDLMYELSDALDAFEADKNVGCIVLTGCGRAFAAGADIKEMQPL 110


>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
          Length = 280

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 172 SKKNVGLIQLNRPKALNALCKPL 240
           +K N G+I +NRPKALNAL  P+
Sbjct: 90  TKNNAGIITMNRPKALNALNLPM 112


>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 36  CRYCNSCFAGKECTEQVQSGIRN-KPSIHKV 125
           C YC++C  GK+   + QS I N KP I  V
Sbjct: 321 CDYCDACLKGKDKRLEFQSLIDNYKPDIVNV 351


>SB_38336| Best HMM Match : UCR_TM (HMM E-Value=4.6)
          Length = 165

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 194 MSPTFFLEPTTSTLMFSYDAVL*NFMDAWLVADTTLHLFSTFFPSKARVTVATEAI 27
           ++PT  L+  TS     YD+ L +    WL+  + L  F T++    ++T+A + +
Sbjct: 27  ITPTTPLDSWTSD-QSGYDSHLASTFSEWLMGFSFLLFFMTYYREFKKITIAIKVV 81


>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 FDADSNIAAIIITGNEKAFAAGADIKEM 353
           F+ D ++   ++TG    F AG+D++E+
Sbjct: 67  FEIDDSVNVAVLTGKGGNFCAGSDLQEL 94


>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 118 IKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPL 240
           I  Y    +  IK+EV+G KK V ++     + L A+C  L
Sbjct: 571 IVLYLFLKFVFIKIEVIGKKKTVLMLYNISGRHLRAICARL 611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,321
Number of Sequences: 59808
Number of extensions: 246959
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)