Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0931
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-6|CAA81594.1|  288|Caenorhabditis elegans Hypothetical pr...    60   8e-10
AL132876-4|CAC48118.1|  256|Caenorhabditis elegans Hypothetical ...    42   2e-04
U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical pr...    32   0.17 
U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical pr...    32   0.17 
Z46240-4|CAA86314.1|  255|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical...    31   0.40 
Z77660-10|CAB01180.1|  283|Caenorhabditis elegans Hypothetical p...    28   2.8  
AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U67956-4|AAB07693.1|  396|Caenorhabditis elegans Hypothetical pr...    26   8.7  
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    26   8.7  

>Z27079-6|CAA81594.1|  288|Caenorhabditis elegans Hypothetical
           protein T05G5.6 protein.
          Length = 288

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 28/60 (46%), Positives = 40/60 (66%)
 Frame = +1

Query: 73  VLNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVEL 252
           ++   K+ +  +Q  +  +S+ + E IK+E VG K+NV LI+LNRPKALNALC  L  EL
Sbjct: 8   LVRNAKLCANVNQMQVAAFSSKAPEMIKIEKVGEKQNVALIKLNRPKALNALCAQLMTEL 67



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 35/64 (54%)
 Frame = +3

Query: 207 PKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAFAAGADIKEMQTIHSAAHKQV 386
           PK        ++     A+   D D ++ AI+ITG+E+AFAAGADIKEM     A     
Sbjct: 53  PKALNALCAQLMTELADALEVLDTDKSVGAIVITGSERAFAAGADIKEMTNNEFATTFSG 112

Query: 387 SFVN 398
           SF++
Sbjct: 113 SFLS 116


>AL132876-4|CAC48118.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8A.4 protein.
          Length = 256

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +1

Query: 151 IKVEVVGSKKNVGLIQLNRPKALNALCKPLFVEL 252
           I +   G+ +NV LI LNRP ALNALC+ L +EL
Sbjct: 2   ITLSRTGAAENVALITLNRPSALNALCRELMLEL 35



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 273 DADSNIAAIIITGNEKAFAAGADIKEMQTIHSA 371
           + D +   I++TG+EKAFAAGADIKEM  +  A
Sbjct: 43  EKDQSYHVIVLTGSEKAFAAGADIKEMAKLEFA 75


>U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical
           protein F09F7.4b protein.
          Length = 363

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 130 STASYENIKVEVVGSKKNVGLIQLNRPKALNAL 228
           S A+   I V+  GSKK   ++ LNRPKALNAL
Sbjct: 6   SAAAKSEILVDTHGSKK---VVTLNRPKALNAL 35


>U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical
           protein F09F7.4a protein.
          Length = 386

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 130 STASYENIKVEVVGSKKNVGLIQLNRPKALNAL 228
           S A+   I V+  GSKK   ++ LNRPKALNAL
Sbjct: 29  SAAAKSEILVDTHGSKK---VVTLNRPKALNAL 58


>Z46240-4|CAA86314.1|  255|Caenorhabditis elegans Hypothetical
           protein B0272.4 protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 175 KKNVGLIQLNRPKALNALCKPLFVEL 252
           K NV  + LNRPK  NAL + +F++L
Sbjct: 11  KNNVLWVTLNRPKKFNALTRQMFLDL 36


>AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical
           protein Y25C1A.13 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 252 RKAVNDFDADSNIAAIIITGNEKAFAAGADI 344
           +KA++    D    +III+G  KAF AG DI
Sbjct: 59  KKAIDSLADDPKCRSIIISGEGKAFCAGIDI 89


>Z77660-10|CAB01180.1|  283|Caenorhabditis elegans Hypothetical
           protein F38H4.8 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 273 DADSNIAAIIITGNEKAFAAGADIKEMQT 359
           D    + ++II  N K+F+AG ++KE+ T
Sbjct: 58  DKIEKVRSVIIAHNGKSFSAGHELKELTT 86


>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 110 WLVADTTLHLFSTFFPSKARVTVATEAI 27
           W  +D+ LH   T  P+ A++ +AT ++
Sbjct: 286 WTHSDSLLHFLRTLPPTIAKINIATSSV 313


>AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical
           protein T21G5.6 protein.
          Length = 90

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 139 MLCYKTLWMLGLLRIPLCTCSVHSFPAKHE 50
           M+C+K  W   LL + L   S+ SFP   E
Sbjct: 1   MICFKIDWCQFLLILVLLISSLESFPVSSE 30


>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +3

Query: 30  GFCRYCNSCFAGKECTEQVQSGIRNKPSIHKVL*HSIIREHQG*G-GRLQEECRTHSVKP 206
           GF   CN+ + G  C E +    +N+ +      +S+   +     G+    C       
Sbjct: 137 GFQCICNNGYGGSYCEEGIDHCAQNECAEGSTCVNSVYNYYCDCPIGKSGRYCER----- 191

Query: 207 PKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAF 326
              TEC++   +C   + + + D D N   +  +G E  F
Sbjct: 192 ---TECALMGNICNHGRCIPNRDEDKNFRCVCDSGYEGEF 228


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +3

Query: 30  GFCRYCNSCFAGKECTEQVQSGIRNKPSIHKVL*HSIIREHQG*G-GRLQEECRTHSVKP 206
           GF   CN+ + G  C E +    +N+ +      +S+   +     G+    C       
Sbjct: 137 GFQCICNNGYGGSYCEEGIDHCAQNECAEGSTCVNSVYNYYCDCPIGKSGRYCER----- 191

Query: 207 PKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAF 326
              TEC++   +C   + + + D D N   +  +G E  F
Sbjct: 192 ---TECALMGNICNHGRCIPNRDEDKNFRCVCDSGYEGEF 228


>U67956-4|AAB07693.1|  396|Caenorhabditis elegans Hypothetical
           protein F16F9.4 protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 350 LLNISTSRKRLLVTSDDDGSNVAVGV 273
           LL++  +RKR+L++ D  G N+A  V
Sbjct: 175 LLDLPFNRKRVLISGDSAGGNLAAVV 200


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
           C.elegans glp-1 gene,complete cds. ).
          Length = 1295

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +3

Query: 30  GFCRYCNSCFAGKECTEQVQSGIRNKPSIHKVL*HSIIREHQG*G-GRLQEECRTHSVKP 206
           GF   CN+ + G  C E +    +N+ +      +S+   +     G+    C       
Sbjct: 137 GFQCICNNGYGGSYCEEGIDHCAQNECAEGSTCVNSVYNYYCDCPIGKSGRYCER----- 191

Query: 207 PKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITGNEKAF 326
              TEC++   +C   + + + D D N   +  +G E  F
Sbjct: 192 ---TECALMGNICNHGRCIPNRDEDKNFRCVCDSGYEGEF 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,479,443
Number of Sequences: 27780
Number of extensions: 182357
Number of successful extensions: 537
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)