Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0931
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.97 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 207 PKGTECSMQTIVCRTRKAVNDFDADSNIAAIIITG 311
           PKG++CSM T     +K V D + D +I   + TG
Sbjct: 279 PKGSKCSMIT-TPEIKKEVEDMEYD-DIKTELSTG 311


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 187 RHSSWSRPPQP 155
           R  SWSRP +P
Sbjct: 164 RKRSWSRPREP 174


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 127 KTLWMLGLLRIPLCTC 80
           K L   G+  IP CTC
Sbjct: 302 KALLTPGVTMIPACTC 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,713
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)