Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0930
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429           28   7.5  
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879...    27   9.9  

>02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429
          Length = 62

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 328 QQATANYLQAFNEHRNIM-RQRERPKSELWSFGVS 227
           QQA+AN + A N  RNI+ R+     S  W+ G++
Sbjct: 21  QQASANGVTACNIRRNILVRKNSEESSTQWTTGIA 55


>03_02_0482 +
           8798931-8799024,8799118-8799253,8799435-8799506,
           8799583-8799654,8799798-8799869,8800133-8800204,
           8800530-8800627,8800892-8801062,8801141-8801473,
           8802494-8802739,8802884-8803017,8803132-8803344
          Length = 570

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 495 FFLSNNFIALKSLIIVQKPSRSY*SIGPRPPSACGRLH--CAANVTRLVTSRINT 337
           FF+ N  +  K +  V K +    S GP PPSA   ++     N TRLV S + T
Sbjct: 173 FFIGNRGLCGKQINSVCKDALQSPSNGPLPPSADDFINRRNGKNSTRLVISAVAT 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,969
Number of Sequences: 37544
Number of extensions: 224841
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)