Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0930
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06640.1 68416.m00772 protein kinase family protein contains ...    29   2.1  
At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase...    29   2.7  
At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase...    29   2.7  
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi...    27   8.3  

>At3g06640.1 68416.m00772 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 763

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 358 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPKSELWSFGVSL 224
           SDV  K +SKQ+ +   +Q+F +  ++M++   P   L+   V+L
Sbjct: 468 SDVAVKLISKQEYSEEVIQSFRQEVSLMQRLRHPNVLLFMGAVTL 512


>At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 499

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 361 VSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPKSELW 242
           V+DVT K   +QQ   +Y   F E R+     + P  +LW
Sbjct: 18  VADVTLKQEDEQQERRSYSTPFREERDTFGPIQVPSDKLW 57


>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 510

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 361 VSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPKSELW 242
           V+DVT K   +QQ   +Y   F E R+     + P  +LW
Sbjct: 18  VADVTLKQEDEQQERRSYSTPFREERDTFGPIQVPSDKLW 57


>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
           to receptor kinase GI:498278 from [Petunia
           integrifolia]; contains protein kinase domain,
           Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 652

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = -3

Query: 367 HAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPKSELWSFGVSLLKL*VELYSYK 191
           + +SD+ + Y  +  + A+      E R++ +   +P ++++SFGV LL+L     S+K
Sbjct: 495 YGLSDLHDPYSIEDTSAASLFYKAPECRDLRKASTQP-ADVYSFGVLLLELLTGRTSFK 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,478,246
Number of Sequences: 28952
Number of extensions: 191227
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)