Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0927
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    30   0.32 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.0  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   3.0  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   5.2  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.1  

>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 216 DDRATASKHSAGWIHYAEGGVVGVLTGSRLPTRYNTEICGIYIFVDIFNEV 64
           D   T S H   W HY++GG    LT   L  R + E+      +D+++++
Sbjct: 14  DSYTTDSSH-INWSHYSDGGFTLSLTSGLLQIRQHEELIQSINLLDLWHQL 63


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 355  WSYVV*LYHSVDSEMYSGVVK 293
            W Y + + HS+D++ + GVV+
Sbjct: 1287 WPYAIIVAHSIDAKTFQGVVR 1307


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 64  YFIEDINKDVDTTNLRIVSGWEATPGQHPHHAAL 165
           Y  ED++ D +    + ++G  A   + PHH+ L
Sbjct: 95  YNSEDLSNDTENNETKSINGKSALDLKEPHHSEL 128


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 67  FIEDINKDVDTTNLRIVSGWEATPGQH 147
           F++D+N+ +D + ++ V      PG H
Sbjct: 172 FLKDVNRSIDLSFIKYVGDAAGRPGDH 198


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 40  SLSQKVKPYFIEDINKDVDTTNLRIVSGWEATPGQHPH 153
           +L++ ++ Y I  +N D    N+R +    + PG+  H
Sbjct: 171 TLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEH 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,265
Number of Sequences: 5004
Number of extensions: 61458
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)