Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0927
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460 30 1.3
02_01_0100 + 743467-744868,745066-745127 30 1.8
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 3.1
01_01_0315 + 2560337-2560675,2560737-2560781,2561630-2561749,256... 28 5.4
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 28 7.1
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 7.1
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 28 7.1
02_01_0752 - 5583757-5584092 28 7.1
09_04_0384 - 17153064-17154233 27 9.4
04_04_0934 + 29504806-29505532,29506059-29506202,29506291-295064... 27 9.4
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 27 9.4
02_05_0340 + 28105222-28105960,28106844-28106987,28107083-281072... 27 9.4
>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
Length = 499
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 431 TSSQFVCNRRLMPSGTTTDSPCMPAVWSSLDEWCYSEVLNWVYLRAVATRLAPQ 592
T+ Q +C+ + G D P PAV S L ++ L + LR +A L+ +
Sbjct: 276 TAHQVLCHPWVCDDGVAPDRPLAPAVLSRLKQFSAMNRLKKMALRVIARNLSEE 329
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 228 PLPVDDRATASKHSAGWIHYAEGGVVGVLTGSRLPTRYNTEICGIYIFV 82
PLP DD ATA S W++ + V S T ++T G+ I V
Sbjct: 25 PLPADDDATAGV-SPSWVYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHV 72
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 237 SDH-PLPVDDRATASKHSAGWIHYAEGGVVGVLTGSR 130
+DH P P DDRAT+ H H+ GG G G R
Sbjct: 80 ADHSPSPRDDRATSWDHGRHHHHHNSGGRRGSFGGRR 116
>01_01_0315 +
2560337-2560675,2560737-2560781,2561630-2561749,
2562224-2562444,2562799-2562901,2562997-2563074,
2563176-2563267,2563377-2563439,2563527-2563749,
2563788-2563886
Length = 460
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 584 QVGLRQHASIPSSGPRSSTIRPET 513
Q G RQHAS P + P IRP++
Sbjct: 359 QGGARQHASRPEASPLDFVIRPQS 382
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 516 DDQTAGIHGESVVVPEGISRRLHTNWLE 433
DDQ G+HGE + G++ L WL+
Sbjct: 253 DDQPLGLHGEHQYMNAGLAVALVNTWLQ 280
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 22 LVLCGQSLSQKVKPYFIEDINKDVDTTNLRIVSGWEATPGQHPHHAALRIVDPTGGV 192
L LCG +S ED N D D + + S Q P AAL + P GV
Sbjct: 45 LYLCGDEISAAA-----EDENDDDDDGTVSVKSFETCAMPQEPQAAALTVARPANGV 96
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 528 HSSRDDQTAGIHGESVVVPEGISRRLHTN 442
H S DDQ +H +++ VPEG S + N
Sbjct: 493 HDSMDDQALFLHEKNLFVPEGRSSDNYNN 521
>02_01_0752 - 5583757-5584092
Length = 111
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 194 NTPPVGSTMRRAAWWG 147
N PP G +RA WWG
Sbjct: 3 NVPPAGGRRQRAWWWG 18
>09_04_0384 - 17153064-17154233
Length = 389
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 467 PSGTTTDSPCMPAVWSSLDEWCYSEVLNWV 556
PS T + C P SLD C + L W+
Sbjct: 206 PSATPSSGICTPHTRRSLDAVCGGQALRWI 235
>04_04_0934 +
29504806-29505532,29506059-29506202,29506291-29506443,
29506589-29506704,29507180-29507347,29507716-29507778,
29507827-29508051,29508472-29508594
Length = 572
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 431 TSSQFVCNRRLMPSGTTTDSPCMPAVWSSLDEWCYSEVLNWVYLRAVATRLAPQ 592
T+ + +C+ + G D P PAV S + ++ L + LR +A L+ +
Sbjct: 336 TAHEVLCHPWIRDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVIAESLSEE 389
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 175 PLCGGRRGGGADRESPPNQ 119
P+C GGG D+ SPP Q
Sbjct: 360 PVCAMTGGGGNDKRSPPQQ 378
>02_05_0340 +
28105222-28105960,28106844-28106987,28107083-28107235,
28107418-28107533,28107819-28107986,28108792-28109016,
28110445-28110483,28110497-28110592
Length = 559
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 431 TSSQFVCNRRLMPSGTTTDSPCMPAVWSSLDEWCYSEVLNWVYLRAVATRLAPQ 592
T+ + +C+ + G D P PAV S + ++ L + LR +A L+ +
Sbjct: 340 TAHEVLCHPWICDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVIAESLSEE 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,802,758
Number of Sequences: 37544
Number of extensions: 495676
Number of successful extensions: 1539
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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