Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0923
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    99   6e-22
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   3.8  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   3.8  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 98.7 bits (235), Expect = 6e-22
 Identities = 44/64 (68%), Positives = 53/64 (82%)
 Frame = +3

Query: 276 QLPLFV*AVGITAFSLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 455
           Q+PLF  A+ IT+  LLL+LPVLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFG
Sbjct: 187 QMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFG 246

Query: 456 HPEV 467
           HPEV
Sbjct: 247 HPEV 250



 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 35/70 (50%), Positives = 42/70 (60%)
 Frame = +1

Query: 1   GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 180
           GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI
Sbjct: 95  GAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAI 154

Query: 181 FSLHLAGISS 210
            SL L GISS
Sbjct: 155 LSLQLTGISS 164



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = +2

Query: 467 HILILPGFGIISHIF----HKKED*KKLLVFRNNYAILAIGLLGFM 592
           +ILI+P FG++SHI     HK    K+ ++    +A+L+I LLG M
Sbjct: 251 YILIMPAFGVVSHIIPSLAHKPIFGKEGML----WAMLSIALLGLM 292


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 476 ILPGFGIISHIFHKKED*KKLLVFRNNYAILA 571
           +L G G  + ++HKK    KLLV +N    LA
Sbjct: 192 MLNGIGFTTFLYHKKYTTDKLLVGQNRRTFLA 223


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 403 LLEEETQFYINIYFDFLDILKSYLNFTRIWYNF 501
           +++E+ + Y+NI  + L IL  +  F +++Y F
Sbjct: 135 IIKEKKEKYVNIEKEALCILSKHPGFIKLFYTF 167


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -1

Query: 288 IRVIDQMIYY--LTYINYCCNKINCSY 214
           +R++D + YY  L+ I  CCN++NC++
Sbjct: 36  LRLLDFLEYYPGLSEIG-CCNELNCAF 61


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 48  TPTPLPYIINFKKNCRKWCRNRMNS 122
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,005
Number of Sequences: 5004
Number of extensions: 44489
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)