Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0919
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0127 + 21019266-21019670 31 0.76
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565... 30 1.3
07_01_0975 + 8223269-8224354 29 1.8
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 4.1
03_02_0589 + 9673928-9674123,9674557-9674713,9675588-9675669,967... 28 4.1
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 28 4.1
12_01_0877 - 8415186-8415272,8415696-8416310 27 9.4
11_01_0720 - 5943243-5944399,5946142-5946271 27 9.4
03_02_0866 - 11907872-11908468,11908603-11908880,11908981-11909182 27 9.4
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 27 9.4
>09_06_0127 + 21019266-21019670
Length = 134
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 158 SGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSA 36
SGS+T +TG + S A S SS AS RS P P + +A
Sbjct: 44 SGSSTSTTGTTPSAAASGSSSTASSSRSVNAPPPPPTPTAA 84
>08_02_0396 -
16654603-16655030,16655803-16655906,16655988-16656579,
16656820-16656993,16657105-16657309
Length = 500
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 127 DLPVENVAEPEDLSPVQVVNPIVENSQSE 213
D PVE++AE PVQ + ++EN+Q +
Sbjct: 94 DAPVESIAEEVLEEPVQCLETVIENTQEQ 122
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 170 GLKSSGSATF-STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSA 36
G SSG+A+ + G S S A + G +S G + SP PSSS SA
Sbjct: 301 GPSSSGAASGPAEGPSPSGAAGPAEGPSSYGSTEGPSPSPSSSGSA 346
>04_04_1457 - 33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 161 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 15
SSG T + G STS A S+++ G S + + P S+ S+G Q++
Sbjct: 985 SSGPTTSNEGASTSGAASQTASGVLSG-SGVLNARPGSTTSSGLLAQMV 1032
>03_02_0589 +
9673928-9674123,9674557-9674713,9675588-9675669,
9675759-9675806,9676566-9676666,9676871-9676979,
9677004-9677093
Length = 260
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 16 ISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEK----AQLVDLPVENVAEPEDLSPVQVV 183
IS E+ + DG +++ +P A PED+E+ + P E+ P P++VV
Sbjct: 146 ISREEFDLKQSYDGKAILLQGVPRNAVPEDIERFLCGTNVEPPPFESFLRPGVPDPIRVV 205
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 28 EYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQ 207
E P+E D + L ++ E +PE K+++ +P NV P+ +V ++S
Sbjct: 426 EVPSETDNYVDALNTLESETETEPELQTKSRVKPVPSLNVDVPQVELIDNIVTESPDSSV 485
Query: 208 SEYP 219
+E+P
Sbjct: 486 AEFP 489
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 85 IEAQPEDLEKAQLVDLPVENVAEPED-LSPVQVVNPIVENSQSEYPGKRYPDAT 243
IEA E+ + P E EPE L P + P+V N S P P+AT
Sbjct: 151 IEATLPKKEEPKPPSPPREAEPEPEPPLPPPEEPTPLVRNEPSPAPTPEKPEAT 204
>11_01_0720 - 5943243-5944399,5946142-5946271
Length = 428
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 137 TGRSTSWAFSKSSGCASIGRSTITS 63
TG STSW F + GC + R+ + S
Sbjct: 101 TGSSTSWVFCECDGCHTNPRTFLQS 125
>03_02_0866 - 11907872-11908468,11908603-11908880,11908981-11909182
Length = 358
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 173 TGLKSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFP 54
+G S+ SA+ TG ST ++GCA I + + PFP
Sbjct: 308 SGQTSALSASRDTGLSTD---PNAAGCAEISSAPTSQPFP 344
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 121 LVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPG 222
L+DL + + + DLS V +V P+ S+ + PG
Sbjct: 512 LIDLNITSSQKKVDLSDVGIVGPLSGGSEDKGPG 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,721
Number of Sequences: 37544
Number of extensions: 203828
Number of successful extensions: 550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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