Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0919
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 30   1.4  
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     29   3.1  
SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)        28   4.1  
SB_2822| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -3

Query: 161 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGY 30
           SS S++ S+  S+S + S SS  +S   S+ +S   SSS S GY
Sbjct: 589 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASLGY 632


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 401 RFRNSLKDTQTF-SKKV*KN*LLI*EMLFIKYRKIMNVNV 285
           RFRNS+KDT+ F S  V  +  L+   + I+ RK+ N  V
Sbjct: 111 RFRNSVKDTRVFRSSDVGSDHYLVCATVKIRLRKVQNGRV 150


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 243  CSVRVS-FAGVFTLTVLNDGVNYL 175
            CS+RV+ +    TLTV  DGVNY+
Sbjct: 2036 CSIRVNRYRNAATLTVEKDGVNYI 2059


>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
          Length = 594

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 26  LNILLNWTKMETDLLLLIYLLR-HNPKI*RKPSLLTFPSKMSLNQKT 163
           + + L W K E DL  L+YLL         KP++L   S++  N++T
Sbjct: 395 VTVSLPWKKSEEDLSYLLYLLSVQMSNNTDKPAVLESTSRVGANKRT 441


>SB_2822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 318 Y*IQKNYECKCSNSDKNLK 262
           Y  ++N +C+C N DKN+K
Sbjct: 22  YPARENKKCRCPNKDKNMK 40


>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 125 TSWAFSKSSGCASIGRSTITSPFP 54
           T W FS++    + GR+ +TSP+P
Sbjct: 550 TEWGFSEACHPYTSGRTRVTSPWP 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,520
Number of Sequences: 59808
Number of extensions: 248596
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)