Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0919
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 390 IPEPCKCAIRLV 425
           +PEPC+C  R +
Sbjct: 475 LPEPCRCHARCI 486


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 390 IPEPCKCAIRLV 425
           +PEPC+C  R +
Sbjct: 475 LPEPCRCHARCI 486


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 228 SFAGVFTLTVLNDGVNYLNRA*VFWFSDIF 139
           +F G+  L VLN   N L       F D+F
Sbjct: 330 TFLGLIRLIVLNLSYNMLTHIDARMFKDLF 359


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 92  ASIGRSTITSPFPSSSNSA 36
           A+   ST TSP P+SS +A
Sbjct: 832 AAATSSTSTSPRPASSTAA 850


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,982
Number of Sequences: 438
Number of extensions: 2380
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)