Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0919
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.48 
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    31   0.64 
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    31   0.64 
At4g21450.2 68417.m03102 vesicle-associated membrane family prot...    30   1.1  
At4g21450.1 68417.m03103 vesicle-associated membrane family prot...    30   1.1  
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put...    29   2.6  
At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C...    27   6.0  
At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C...    27   6.0  
At2g36420.1 68415.m04471 expressed protein                             27   6.0  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    27   7.9  

>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 10  GSISWVEYPA-ELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVN 186
           G+ S+  + A  L  D   L I D  ++    +L   ++ DLPV    EPE+L   +VVN
Sbjct: 141 GASSFCAFAAFPLLRDKGYLPIQDSRLDEPVTELPPLKVKDLPVMETNEPEEL--YRVVN 198

Query: 187 PIVENSQS 210
            +VE ++S
Sbjct: 199 DMVEGAKS 206


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 28  EYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 180
           E P+E DE+ NG  +   P E   EDLE  +  D+ ++   E ++   V V
Sbjct: 375 EGPSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFESDNEQVVNV 425


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 161 SSGSATFSTGRSTSW--AFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEPTS 3
           SS S   +TG S S+  A S S    SI  +T +SPF  SS+SAG +  L   +S
Sbjct: 243 SSSSIFGATGSSPSFSVASSASGSSPSIFGATGSSPFFGSSSSAGSTPSLFASSS 297


>At4g21450.2 68417.m03102 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 212

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 113 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 18
           F  SSG  +   S  TSPFPS ++S+  S+ L
Sbjct: 23  FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54


>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 295

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 113 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 18
           F  SSG  +   S  TSPFPS ++S+  S+ L
Sbjct: 23  FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54


>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1503

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 37  AELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLS 168
           A+++    G+V+V    EA  ++ +K   VD  + N+ EP+DL+
Sbjct: 477 ADINVAEPGVVVVGAAKEAVIKEDDKDDEVDKTISNIEEPDDLT 520


>At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 351

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 37  AELDEDGNGLVIVDLPIEAQPEDLEKAQLV 126
           A   +DGNGLV V L ++ +P   E+A+ +
Sbjct: 196 ATTSDDGNGLVPVQLSVDFKPNIPEEAERI 225


>At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 351

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 37  AELDEDGNGLVIVDLPIEAQPEDLEKAQLV 126
           A   +DGNGLV V L ++ +P   E+A+ +
Sbjct: 196 ATTSDDGNGLVPVQLSVDFKPNIPEEAERI 225


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 94  QPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGKRYPD 237
           + E LEK +  +   +   + E  SPV V++P+ E  + E   +  PD
Sbjct: 227 ETESLEKVRGQEEEDKEEEDKEQCSPVSVLDPLEEEEEDEDHHQHEPD 274


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +1

Query: 13   SISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDL---PVENVAEPEDLSPVQVV 183
            S+S  +   + D+DG G  + DL  +AQ +  ++   +D      +   EP  +S V+  
Sbjct: 1331 SVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVEDP 1390

Query: 184  NPIVENSQSEYPGKRYPD 237
                EN  +E   +  P+
Sbjct: 1391 EMDSENEDTEVSKEDTPE 1408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,071,294
Number of Sequences: 28952
Number of extensions: 185637
Number of successful extensions: 564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)