Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0913
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 2.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 3.2
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 4.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 5.7
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 5.7
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 7.5
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 9.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 9.9
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 9.9
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 539 FIECNVLIMYFVVWVRFLVVYSFHLLLLKPF---SLFAFYLQVFLYLQFE 399
F + NV+ + V F ++YSF L +P SLF+ +LQ+ L +Q +
Sbjct: 712 FAKINVIERSYFV---FALLYSFLSFLQRPLGHLSLFSCFLQILLLIQLK 758
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 150 TKPSLQASLTDNIENAINKTQEKDVAAQKELFILWKKQGS 269
TK + Q + + +E INK+ E +K+L + KQGS
Sbjct: 866 TKLNFQVNELEQLEKDINKSSEDCDLQKKKLLEVSSKQGS 905
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 150 TKPSLQASLTDNIENAINKTQEKDVAAQKELFILWKKQGS*NLKSNHIVLTE*NVYRLLK 329
TK ASL +EN N + K++ ++E L +K + + N + L V + L+
Sbjct: 52 TKNPKLASLEFQLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNSLQLRLTLVEKQLE 111
Query: 330 RNRDNYKKK 356
+Y+K+
Sbjct: 112 EQSTSYQKE 120
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 407 EDKEKLVDKTQTKKKVLTAIDENYIPPEILP 499
E EKL+ +T + + A D I PE+LP
Sbjct: 279 EKNEKLLQNVKTSEIPINAADLEGINPELLP 309
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 380 NEEKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPEILPKRRNTLL 520
N+E+I + K TKK++ D +P E +P N L
Sbjct: 59 NDEQISELVNGVNSTTIKENTKKEISNPNDSTRLPLEQIPGSNNLFL 105
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 245 YSLEKTRQLKLEEQSHRLDRVK 310
Y LEK+R +L++ RLD +K
Sbjct: 466 YELEKSRGSELQDAKRRLDELK 487
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 368 WFFENEEKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPEILPK 502
WF E+E++ + ++KE+L+ + + ++K L PE PK
Sbjct: 68 WFRESEKRELMWKKEKEQLLKEKELRQKALDKERMVSSKPETNPK 112
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 277 KFQLPCFFQRINNSFC 230
KF P +FQR SFC
Sbjct: 906 KFTQPSYFQRYGGSFC 921
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 449 FSLFA-FYLQVFLYLQFEGQFFPHSQRTTAFA 357
F+ F F+LQ+F + F FFPH +T A
Sbjct: 3 FAFFGIFWLQIFGSILFLLGFFPHKNDSTGKA 34
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 371 FFENEEKIDL----QIEDKEKLVDKTQTKKKVLTAIDENYIP 484
F +EEK +L I D EKL ++ + A+DE + P
Sbjct: 148 FIASEEKKELINCIPIPDDEKLTNRLHEVSEAFFALDEQHTP 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,523
Number of Sequences: 5004
Number of extensions: 30187
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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