Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0913
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    28   5.8  
01_06_1638 + 38812226-38812660,38812989-38813063,38813180-388132...    28   5.8  

>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 521 LIMYFVVWVRFLVVYSF-HLLLLKPFSLFAFYLQVFLYLQF 402
           L +YFV++   LV Y+F  LL   P++   FY  V L   F
Sbjct: 467 LTLYFVIYSITLVYYAFIRLLPWSPWTRLQFYATVILLAIF 507


>01_06_1638 +
           38812226-38812660,38812989-38813063,38813180-38813284,
           38813387-38813472,38813554-38813674,38813761-38813840,
           38814005-38814067,38814205-38814326,38814429-38814514,
           38814626-38814750,38814883-38814911,38815188-38815333,
           38815643-38815822,38816445-38816585
          Length = 597

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 554 GFYISFIECNVLIMYFVVWVRFLVVYSFHLLLLKPFSLFAFYLQVF 417
           G  I+FI    ++ +F VW R  ++ S  +L   PFS F+   Q +
Sbjct: 556 GMEIAFIVFGTIV-HFPVWARIFLIISLSIL---PFSAFSITFQEY 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,769
Number of Sequences: 37544
Number of extensions: 150202
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)