Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0913
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     31   0.63 
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   29   1.9  
SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)            28   5.9  
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  28   5.9  
SB_47150| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-15)                 27   7.8  
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_1183| Best HMM Match : BiPBP_C (HMM E-Value=10)                     27   7.8  

>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 377 ENEEK---IDLQIEDKEKLVDKTQTKKK-VLTAIDENYIPPEILPKRRNTLLI 523
           +NEEK   I  Q E+K++  D  + K++ +LT  +E    P + PK   TLLI
Sbjct: 759 QNEEKQSGILTQNEEKQRYPDTKREKQRGILTQNEEKQRGPALTPKETQTLLI 811


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +3

Query: 132 KIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWKKQ 263
           +IE +    S Q S  D I++ + KT+++ +A QKELF+  +++
Sbjct: 284 EIEKLRGDISKQFSDADEIQSELGKTKQEMLALQKELFLSGERE 327


>SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 470 HLLLLKPFSLFAFYLQVFLYLQFEGQFFPHSQR 372
           +LLLL+ FS F  +L V   L  E   F HS+R
Sbjct: 306 NLLLLRGFSTFIIFLMVKRNLHVESIDFSHSKR 338


>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
          Length = 479

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 262 CFFQRINNSFCAATSFS--WVLLIAFSILSVKD 170
           CF +R++ +   +  F+  W+ +I  S LSVKD
Sbjct: 119 CFVERVSKAAALSVCFAHVWITVIVISWLSVKD 151


>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 145 IISIFASKDIHFSNTSFFSGSTLC-SSLFRRSIT 47
           ++SI  S+ +HF   S FSG +LC   LF R  T
Sbjct: 93  LLSIRPSQGVHFVEYSSFSGCSLCWVFLFHRVFT 126


>SB_47150| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-15)
          Length = 382

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 229 AATSFSWVLLIAFSILSVKDACKEGFVGIISIFASKDIHFSNTS 98
           A    SWVL +A+SIL+   A +   + +     S D HFSN S
Sbjct: 152 AIIKLSWVLGVAWSILA-SSAYRGTVIELDHTHYSFDCHFSNQS 194


>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 386 EKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIP 484
           E +++ +ED+ K+ ++ +  +K    +DENY P
Sbjct: 182 EAMEMNLEDQNKVKNREKHSEKNSGKLDENYCP 214


>SB_1183| Best HMM Match : BiPBP_C (HMM E-Value=10)
          Length = 370

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 458 TAIDENYIPPEILPKRRNTLL 520
           TA+ E+++PP I+  RR+TLL
Sbjct: 331 TALPESHLPPGIMLTRRSTLL 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,861
Number of Sequences: 59808
Number of extensions: 189168
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)