Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0913
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025468-2|AAF02174.2|  342|Caenorhabditis elegans Serpentine re...    28   3.9  
AL008881-2|CAA15518.1|  103|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical ...    27   6.9  
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    27   9.1  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    27   9.1  
AC024755-10|ABS19458.1|  245|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF025468-2|AAF02174.2|  342|Caenorhabditis elegans Serpentine
           receptor, class h protein308 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 542 SFIECNVLIMYFVVWVRFLVVYSFHL--LLLKPFSLFAFYLQVF 417
           ++ +CN+   Y   W    + Y  H+  +   PF + AFYL +F
Sbjct: 12  NYSKCNITYTYLASWQG--IAYPSHIAQVFSLPFQILAFYLIIF 53


>AL008881-2|CAA15518.1|  103|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.2 protein.
          Length = 103

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 210 QEKDVAAQKELFILWKKQGS*NLKSNHI 293
           + +DVA + +LF+L  +Q   NL  NH+
Sbjct: 13  ENQDVAGENDLFVLDGRQDPPNLPQNHL 40


>AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical
           protein E03D2.4 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 286 LLFKFQLPCFFQRINNSFCAATSFSWVLLIA-FSILSVKDACKEGFVGIISIFASKDIHF 110
           +L  F  PCF   +  S C   +F  +L+++ F ILS+  +      G++ +  +   H+
Sbjct: 49  ILILFYTPCFIVMV-RSKCQVPAFQVMLILSVFDILSL--SVNSVITGVLDLMGASFCHY 105

Query: 109 SNTSFFSGS 83
               F +G+
Sbjct: 106 PLFIFCAGA 114


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 132 KIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKEL--FILWKK 260
           K   +P KP LQ  +++ IEN +N  Q+      KE+  FI ++K
Sbjct: 241 KCNSLPVKPILQTEISNLIEN-VNSVQKLHQMPTKEMAVFICFQK 284


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 548 YISFIECNVLIMYFVVWVRFLVVYSFHLLLLKPFSLFAF 432
           Y+ F +   + +YF+    FLV+Y    L+L PF ++ F
Sbjct: 7   YLEFCDGGSIYLYFISVFVFLVIY----LILFPFYMYVF 41


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -2

Query: 524 VLIMYFVVWVRFLVVYSFHLLLLKPFSLFAFYLQVFLYLQFEGQFFPHSQRTTA 363
           V+++ F+++ ++L   +FHL +   F L A  L VF        FFPH+++  A
Sbjct: 106 VILVTFIIFAQYLCAEAFHLTI---FLLAAQRLLVF--------FFPHTEKQVA 148


>AC024755-10|ABS19458.1|  245|Caenorhabditis elegans Hypothetical
           protein Y34B4A.2 protein.
          Length = 245

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 374 FENEEKIDLQIEDKEKLVDKTQ 439
           +E +EKID +  DK KLV+KT+
Sbjct: 90  YEVQEKIDKKNYDKMKLVEKTE 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,647,228
Number of Sequences: 27780
Number of extensions: 164337
Number of successful extensions: 739
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)