Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0913
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.68 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 524 VLIMYFVVWVRFLVVYSFHLLLLKPFSLFAFYLQVFLYLQF 402
           ++  + V W+ F V+      L  P ++ AF   +FL+L +
Sbjct: 377 IMSAFIVCWLPFFVLALVRPFLKNPDAIPAFLSSLFLWLGY 417



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 236 FLCCYILFLGFVNSIFN 186
           FL    L+LG+ NS+ N
Sbjct: 407 FLSSLFLWLGYCNSLLN 423


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 59  SK*RAA*GRTREKRSIREMYILTGKNRNYSY 151
           S+ RA   R+RE + I  +   T  N NY Y
Sbjct: 66  SRDRAERERSREPKIISSLSNNTIHNNNYKY 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,789
Number of Sequences: 438
Number of extensions: 2300
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)