Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0913
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    27   6.4  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    27   6.4  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    27   8.4  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    27   8.4  

>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
            protein similar to TAR RNA loop binding protein [Homo
            sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
            rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -3

Query: 268  LPCFFQRINNSFCAATSFSWVLLIAFSILSVKDACKEGFVGIISIFASKDIHFSNTSFFS 89
            +P F + IN+   A         +   +LS K  C E  + ++ I  ++ I     SFFS
Sbjct: 1045 VPAFVRNINHLLTAGVLVRSRRAV---LLSWKWLCVESLLSVMHILDARRIPEDRKSFFS 1101

Query: 88   GSTLCSSLFRRSITSL 41
              T+  S+F+  + SL
Sbjct: 1102 DDTV-KSIFQDIVESL 1116


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1426

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = -3

Query: 271 QLPCFFQRINNSFCAATSF---SWVLLIAFSIL 182
           +LP F+++ +NSF  A S+   SW+L + +S+L
Sbjct: 591 RLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVL 623


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 383 EEKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPE 490
           E K +LQ     KLVD  + K K+L A+  N I  E
Sbjct: 359 EMKKELQERPSAKLVDDLRKKVKILQAVGYNSIEAE 394


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 392 IDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPE 490
           +++Q E+K++ V   +TK+KV+    +  +PPE
Sbjct: 81  LEIQPEEKKEKVLAEETKQKVVPEESKQEVPPE 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,827,381
Number of Sequences: 28952
Number of extensions: 143594
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)