Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0911
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.83
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 28 5.9
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 28 5.9
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 28 5.9
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47) 28 7.7
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 28 7.7
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 28 7.7
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 28 7.7
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 6e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 268 MIPHKTERGKNALRRLRTYDGCPPPFD 348
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 36 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 158
SM+V +C ++W + P F +L+W+ N S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 400 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKK 510
PG C VG+L H W + R L R+ + +K
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARK 443
>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 621
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 252 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 109
H + AL+W+G R FTL + + + LS + K + + C ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 400 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKK 510
PG C VG+L H W + R L R+ + +K
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARK 902
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Frame = +2
Query: 32 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 166
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76
>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
Length = 624
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 400 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKKLPMKXNLRGSP 543
PG+ C VG+L + W + + R L + A + P +P
Sbjct: 535 PGKQLCLVGQLGYRGRWSFSVIDRPLHTRELAAAFTRTPAAKQRANNP 582
>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
Length = 1640
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 400 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKKLP 516
PG C VG+L H W + R L + A + P
Sbjct: 1403 PGEQLCLVGQLGHRARWSSSVIDRPLHTRELAAAFTRTP 1441
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3
Query: 274 GSCLLQSP*NLRWSSKMERSTSRIHVAPL 188
GS + Q+P L W++++ RST ++++PL
Sbjct: 1713 GSLMEQNP-ALEWNTQLWRSTQEVYISPL 1740
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 400 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKKLP 516
PG C VG+L H W + R L + A + P
Sbjct: 1234 PGEQLCLVGQLDHRARWSSSVIDRPLHTRELAAAFTRTP 1272
>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3
Query: 274 GSCLLQSP*NLRWSSKMERSTSRIHVAPL 188
GS + Q+P L W++++ RST ++++PL
Sbjct: 385 GSLMEQNP-ALEWNTQLWRSTQEVYISPL 412
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 213 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 103
R G+ + + ++ ++ LFL PE++ R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,578,533
Number of Sequences: 59808
Number of extensions: 452798
Number of successful extensions: 1917
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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