Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0909
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.5  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   9.9  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   9.9  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 425 SRASPPEAKDLRTRLKMRISPSAEPTD 345
           S  S  E KD+ T L    SP+ +P D
Sbjct: 116 SPKSEKEEKDMETTLTPCASPNRKPDD 142


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 652 TSWATYSRTRLTSAA*SVR*TGIFSRKLLTAGPTSRP 542
           TS  TYS   + ++  SV  T  +   L   G TS+P
Sbjct: 91  TSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQP 127


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
          protein 16 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 17 MKAFIFALALACV 55
          M A +F LALAC+
Sbjct: 1  MTAIVFLLALACL 13


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
          protein 9 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 17 MKAFIFALALACV 55
          M A +F LALAC+
Sbjct: 1  MTAIVFLLALACL 13


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 275 CICVVSATSAPDST*SWLF 331
           C C  S +  P ST  W F
Sbjct: 554 CYCYYSISIRPISTLGWFF 572


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,804
Number of Sequences: 336
Number of extensions: 2519
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)