Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0909
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1110 + 30973202-30973870                                         31   0.68 
05_03_0478 - 14526180-14526578                                         31   0.90 
12_01_0204 + 1539859-1540158                                           30   2.1  
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436...    29   3.6  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   6.4  
01_06_0034 + 25769436-25769701,25769749-25769887                       28   8.4  

>04_04_1110 + 30973202-30973870
          Length = 222

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 509 AIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 351
           A+ + +P S T+  S+R+T A A     ++A  P +  L   L M    +A+P
Sbjct: 102 ALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 551 SWTSRQQLPREDPCLPDGLRS---RGQPCSRVRRPTRH 655
           SW  RQ+   ED    DG R    RGQ   R RRP RH
Sbjct: 54  SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91


>12_01_0204 + 1539859-1540158
          Length = 99

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 185 YAGSWSPPGASDIINFSGRVTDVR 256
           +AGSW+  G   + +F GRVT VR
Sbjct: 38  HAGSWNGEGQGGLAHFGGRVTRVR 61


>01_06_1057 -
           34142979-34143114,34143212-34143390,34143496-34143669,
           34143757-34144005,34144108-34144233,34144341-34144565,
           34144657-34144747,34144837-34144951,34145312-34145366
          Length = 449

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 69  CGTADTQARARAKMKAFIVDWIL 1
           C   DTQ    +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 71  RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 166
           RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>01_06_0034 + 25769436-25769701,25769749-25769887
          Length = 134

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 489 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 379
           +V  +D +C+G+G G   +    G ++   RPQ A E
Sbjct: 16  EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,021
Number of Sequences: 37544
Number of extensions: 350938
Number of successful extensions: 1124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)