Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0909
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U40933-6|AAQ23123.1|  199|Caenorhabditis elegans C.elegans homeo...    28   7.6  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   7.6  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    28   7.6  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 599  DGLRSRGQPCSRVRRPTRHQQITVNYSNDTCESKINY 709
            D +RS  +  SR RR +R   +   + NDT  SKIN+
Sbjct: 1362 DFVRSSYRTSSRYRRMSRGDLMRGMHQNDTIRSKINF 1398


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 599  DGLRSRGQPCSRVRRPTRHQQITVNYSNDTCESKINY 709
            D +RS  +  SR RR +R   +   + NDT  SKIN+
Sbjct: 1333 DFVRSSYRTSSRYRRMSRGDLMRGMHQNDTIRSKINF 1369


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 464 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVP 300
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEP 743


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 410 PEAKDLRTRLKMRISPSAEPTDAETLGT 327
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 181
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>U40933-6|AAQ23123.1|  199|Caenorhabditis elegans C.elegans homeobox
           protein 19,isoform b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 572 VVDGWSNFASEEIDL-EVRFDIAIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKD 396
           V+DGW+N A+ ++ +  +  D+       + + + +SAR+ +   S  +     P +A  
Sbjct: 43  VIDGWTNMATSQLAMFAIANDLRTPTLVELQMLLGVSARKHDYKRSRKSVCERKPRQAYS 102

Query: 395 LR 390
            R
Sbjct: 103 AR 104


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 181
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 185 YAGSWSPPGASDIINFSGRVTDVRLMTSAP 274
           + GSW P   SD INF+  +T +  +   P
Sbjct: 511 FCGSWYPDEFSDDINFTSTITPINYIHMNP 540


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 185 YAGSWSPPGASDIINFSGRVTDVRLMTSAP 274
           + GSW P   SD INF+  +T +  +   P
Sbjct: 528 FCGSWYPDEFSDDINFTSTITPINYIHMNP 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,900
Number of Sequences: 27780
Number of extensions: 275700
Number of successful extensions: 773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)