Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0907
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    27   3.2  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   9.7  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 6   LRFVYVMPKLIVVRVFNMRLTLTHVNVRNGSPVNEY*RISGDVSARRAVAW 158
           LR VY+MP  +  +  N +  +T  N  NG  V++  RI  D   R+   W
Sbjct: 169 LREVYLMPFQLACKYSNFKSLMTSYNKVNGEHVSQS-RILLDNILRKEWEW 218


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 170 DLQLPRDSPARADVTGYPSIFV--YRTSITHIDMGQRQTHVEHTDN 39
           D+ L R    R   TGYP+I V     S+   D+   +T +E  DN
Sbjct: 198 DMDLKRSQNMRRRATGYPAIVVPFLNGSLPQADLPPLRT-IEDIDN 242


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +3

Query: 327 LIIFP*NKYIYYNERIEFSFRSNAAQSSVIMKRGARNLISIALDLKLVLNYDCVLTKRIL 506
           L+ FP   ++YY+    F+   N   SS I++  A +      D    +   C + +R L
Sbjct: 496 LVYFPNYPWVYYSNISTFTMSMNDTLSSGILENAALSATQNNSD-SFAVCLACAMIQRSL 554

Query: 507 VRR 515
            R+
Sbjct: 555 ERK 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,553
Number of Sequences: 5004
Number of extensions: 38975
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)