Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0907
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0091 + 5574528-5577254                                           30   1.4  
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415...    28   7.6  

>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 402 QSSVIMKRGARNLISIALDLKLVLNYDCVLTKRILVRRVAAEAGGPALQPSSAG 563
           +SS    R     ++    L+ +   D V T+R+ V RVAA A   AL+PS  G
Sbjct: 681 RSSSAFVRSLGISVATLAGLRALRGLDNVRTRRLTVTRVAATAPSVALRPSMLG 734


>06_01_0581 -
           4153668-4153883,4154070-4155104,4155718-4156292,
           4158457-4158826,4159925-4160590,4161008-4161223,
           4161725-4161793
          Length = 1048

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 372 IEFSFRSNAAQSSVI--MKRGARNLISIALDLKLVLNYDCVLTKRILVRRVAAEA 530
           ++  FR    +S+++   +RG   ++++A          CVL  R L R VA EA
Sbjct: 315 VQMGFRVVLRKSAMVGVFRRGGVTMVAVACAAAAAATVACVLMARALRRAVAREA 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,703
Number of Sequences: 37544
Number of extensions: 250480
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)