Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0907
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57703| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)                   29   4.5  
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_57703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 182 AAYCDLQLPRDSPARADVTGYPSIFVYRTSITHIDM 75
           + YCD+ + RD     D++ Y  + VYR    H DM
Sbjct: 2   SGYCDMSVYRDMSVYRDMSDYRDMSVYRDMSGHRDM 37


>SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 327 LIIFP*NKYIYYNERIEFSFRSNAAQSSVIMKRGARNLI--SIALDLKLVLNYDCVLTKR 500
           L+ FP  K  Y    + F  RS +   SVI        +  S+  DL  +  YDCVLT++
Sbjct: 349 LVPFPVTKQTYLAYHV-FLSRSLSCYRSVINYVNILKHVNNSLGADLSFMQGYDCVLTQK 407

Query: 501 ILVR 512
            L R
Sbjct: 408 ALRR 411


>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
          Length = 691

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 172 ATFNYHATALRALTSPDILQYSFTGLPLRTLTWVNVKRMLNTRTTINFGITY 17
           A F+     + A+T P  L+  FTG    T+TW   KR  +TR    F  T+
Sbjct: 67  AMFSPECKVVLAITEPQDLRVFFTGPRNATITW---KRKKDTRPPDGFLFTF 115


>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -2

Query: 162 TTTRQPCAR*RHRISFNIRLQDFHYAH 82
           TTT QP A   HR   NIRLQD  Y +
Sbjct: 161 TTTSQPPA---HRFCHNIRLQDTDYCY 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,746
Number of Sequences: 59808
Number of extensions: 302255
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)