Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0907
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.85 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 145 LRALTSPDILQYSFTGLPLRTLTWVNVKRMLNT 47
           ++ +  P I Q+SFT LP+    + N++ ++ T
Sbjct: 577 VQVMVPPTIQQFSFTKLPMNAGEFANLQCIVPT 609


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 502 SLSVASRRRPADPRYNPPVLGAAGPPVSSIADVS 603
           S  V++ R PA  +  PP  GA  PP+ +++++S
Sbjct: 395 SALVSAVRSPAGGQL-PPSAGAPMPPIPNMSNMS 427



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 496 NESLSVASRRRPADPRYNPPVLGAAGPPVS 585
           ++S     R  P +P   PP  G  G P S
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,933
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)