Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0905
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 31 0.14
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 1.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 3.8
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 3.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 6.7
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 6.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 8.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.9
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.9
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 109 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 5
I +MR ELG T RC D QA K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -3
Query: 451 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 338
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = -3
Query: 505 DIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSE--------RPQDAAENADFSF 350
D +S SSD + D S S S+ + S GS+ + ++E+ D S
Sbjct: 125 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSS 184
Query: 349 SGTD-*C*NSGNSQD*VESGADVADTTQMQGAESSALTSVTRPE 221
S +D +S D S +D + +G++SS+ +S + E
Sbjct: 185 SSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESE 228
Score = 26.2 bits (55), Expect = 3.8
Identities = 32/159 (20%), Positives = 64/159 (40%)
Frame = -3
Query: 505 DIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*N 326
D +S SSD + D S S S+ + S GS+ ++ +++ S D +
Sbjct: 179 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD-SSSSSSSSESESSSEDNDSS 237
Query: 325 SGNSQD*VESGADVADTTQMQGAESSALTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAA 146
S +S ES ++ +D++ S +S SD+ + S S+
Sbjct: 238 SSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSE 297
Query: 145 LNNSPISLNKFEITMSRMR*ELGSKSTSRCGTADTQARA 29
++S S + + + S E G+ +T + + A++
Sbjct: 298 DSDSTSSSSDSDSSSSS---EDGNSNTDTTTSGEVSAQS 333
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 478 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 359
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 448 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 344
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 265 QGAESSALTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAALNNSPI 128
+G+E RP K+ S L +P P R RG L+ P+
Sbjct: 116 EGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGRGRPRLHPLPV 161
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 6.7
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -3
Query: 460 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 293
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 161 ERISRSQQFTDFIEQV*DHDVKDA 90
E +SR QQF D + + ++KDA
Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.9
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 508
S +GEI + V + + G L NVV EA A D +I SD+ AA + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -1
Query: 513 VSLTSPIVIAAPMSLTMMLSARETEAVA-SATTFSRASPPEAKDLRTRLKMRISPSAEP- 340
+S + P+ + SL+ S+ + + S++TFS A+P +S S+ P
Sbjct: 164 LSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223
Query: 339 -TDAETLGTARTKLSRVPT 286
+ + TL ++ S +P+
Sbjct: 224 SSSSSTLTSSSLSTSSIPS 242
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 481 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 356
SDV D +V+ E + +SN V + K S E D A++ F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,525
Number of Sequences: 5004
Number of extensions: 37516
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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