Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0905
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0204 + 1539859-1540158 30 1.3
04_04_1110 + 30973202-30973870 30 1.7
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 29 4.0
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 5.2
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 6.9
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 28 6.9
01_06_0034 + 25769436-25769701,25769749-25769887 28 6.9
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 9.2
12_01_0574 - 4697425-4698312 27 9.2
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 9.2
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 174 YAGSWSPPGASDIINFSGRVTDVKADD 254
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>04_04_1110 + 30973202-30973870
Length = 222
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 495 IVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 340
+ + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 103 LAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -1
Query: 582 DRDLL*EVVDGWSNFASEEID----LEVSLTSPIVIAAPMSLTMMLSARETEAVASATTF 415
+ D+ VDGW FA + LE+ L +P+ P A +T A S T
Sbjct: 117 EADITLSRVDGWLRFAERHVKGSFILELPLVAPVAARTPRRGEARSQAADT-AATSVTDD 175
Query: 414 SRASPPEAKDLRTRLKMRISPSAEPTDAETLGTA 313
A+ P +++ +++ S AE T + TLG A
Sbjct: 176 GEAAAPADEEV-VVVELPRSTRAE-TMSLTLGYA 207
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 60 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 155
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 27.9 bits (59), Expect = 6.9
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 10/175 (5%)
Frame = -3
Query: 505 DIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADFSFSGTD*C* 329
D+ + CSSD + + D S NDV SG + +D ++ ++S G++ C
Sbjct: 427 DLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEYSSGGSE-CD 485
Query: 328 N--SGNSQD*VESGADVADTTQMQGAESSALTSVTRPEKLMMSDAP----GGLQEPA*PS 167
+ N+ +G D + A + V R + +S P E PS
Sbjct: 486 DKVKRNNSGKASNGNDKGFQPPKKAARTE--HGVLREDTNQISSVPPVENTSQMESNDPS 543
Query: 166 RRRGSAALNNSPISLNKFEITMSRMR*ELGSKSTSRCGTADT---QARARAKMKA 11
R+ + N S + K + S R + KS+SR + T +A AR + A
Sbjct: 544 HRKLHES-NGSTDQIEKSNVRASSSRAKFMEKSSSRNKSKKTLLGRASARRDLSA 597
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 27.9 bits (59), Expect = 6.9
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Frame = -1
Query: 564 EVVD--GWSNFASEEIDLEVSLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 391
EV D GW A L S+ +P V+AAP T ++ S R PP
Sbjct: 34 EVADHYGWGFLACPTASLPFSIAAPPVVAAP---TAGPTSSAPVTFRSRRADCRLDPPAL 90
Query: 390 KDL-RTRLKMRISPSAEPTDAETLG--TARTKLSRVP 289
+ L +LK+ + P A+ G L+R+P
Sbjct: 91 RPLGHVKLKLTLESFPLPPSAQPPGKNNLLADLARLP 127
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 478 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 368
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -3
Query: 478 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 386
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0574 - 4697425-4698312
Length = 295
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +2
Query: 317 VPRVSASVGSAEGE------IRIFSRVLRSFASGGLALENVVAEATASVSLA 454
V + VG+AEGE +R+ +R R + S GLA+ +V A A+ +LA
Sbjct: 220 VAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVLAAAAAALA 271
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 463 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 371
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,485
Number of Sequences: 37544
Number of extensions: 299501
Number of successful extensions: 1054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -