Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0905
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 32 0.33
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.3
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 2.3
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.3
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.3
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 2.3
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39) 29 4.1
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5) 28 7.1
SB_24033| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 27 9.4
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -3
Query: 478 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 302
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 301 ESGADVAD 278
+ A+ D
Sbjct: 225 SNVANDGD 232
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 87 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 8 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67
Query: 452 --ADNIIVSDIGAAITIGD 502
++I V I +GD
Sbjct: 68 METNDIAVRPAKGQIILGD 86
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 389 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 448
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 449 MEKNDIAVRPAKGQIILGD 467
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 517 GG*FDI-ANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 371
GG DI +S+ + TD D + +G+GSGS N + G +GS +++A
Sbjct: 689 GGEDDILVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 78 PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 176
P SQRIL +++ LFN+ L AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430
>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
Length = 225
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 555 DGWSNFASEEIDLEVSLTSPIVIAAPMS--LTMMLSARETEAVASATTFSRA 406
D W A+ ++ V+ SP A PMS ++ S+ +T V+S+ T S A
Sbjct: 90 DDWKEIAAPPNEITVTTPSPSSTATPMSSVTSIQSSSAKTTQVSSSVTTSDA 141
>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 3 TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 122
T ++ A++ AC A+ H+D D+ P+ I+ +IS +F
Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870
>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
Length = 207
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 302 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 478
N+ + R +AS G + EIR+ + + GGLAL + AT L ++VS +
Sbjct: 12 NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71
Query: 479 GAA 487
G A
Sbjct: 72 GLA 74
>SB_24033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = -3
Query: 478 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VE 299
D TD D+ + DG G +D ++ D ++ D D GN++D +
Sbjct: 261 DDTDGDIKDDTDGDGETEDDTDGDIEDDTDGDSDTEDDTDGDIE--DDTDGDGNTED--D 316
Query: 298 SGADVADTTQMQGAESSAL 242
+ D+ D T + SA+
Sbjct: 317 TDGDIGDDTDGDIEDDSAV 335
>SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 967
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 156 PLRRDGYAGSWSPPGASDIINFSGRVTDVKADDSAPCICVVSATSAPDS 302
P+ GY G+ P G I F+G + + C+ V +T P S
Sbjct: 844 PIGPQGYNGTQGPKGDQGIQGFNGTKGESGVGNLTDCVFKVISTDVPVS 892
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -1
Query: 522 DLEVSLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAE 343
DL++S +SP++ + + ++S + + T FSR S P + L I P+
Sbjct: 483 DLKLSSSSPLMNQTSVISSSIISPMGHNGIHTPTAFSRPSMPGIPGIHPGLYGPIIPAPT 542
Query: 342 PTDAETLGTART 307
+ T ++ T
Sbjct: 543 SSAGSTYNSSST 554
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -1
Query: 561 VVDGWSNFASEEIDLEVSLTSPIVIAAPMSLTMMLSARETEAVASATTFSRA-SPPEAKD 385
+VDG + S E+ ++T+P AA + T + E A A ATT + A + +
Sbjct: 270 LVDGPCSTNSTELPATHTVTTPSPPAAIRATTTTATTTEAAATAEATTTATATTTATTTE 329
Query: 384 LRTRLKMRISPSAEPTDAETLGTARTKLS 298
+ + +A T A TA T S
Sbjct: 330 AAATAEATTTATATTTTAAITTTAATTTS 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,062,217
Number of Sequences: 59808
Number of extensions: 337119
Number of successful extensions: 1117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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