Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0905
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   6.2  
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = -1

Query: 510 SLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDA 331
           S ++P+V      LT   SAR +   AS       +P   +++R       S +  P   
Sbjct: 151 STSTPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQ 210

Query: 330 ETLGTARTKLSRVP 289
            T GT+    SR+P
Sbjct: 211 VTPGTSSNHRSRLP 224


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 453 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVP 289
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEP 743


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 399 PEAKDLRTRLKMRISPSAEPTDAETLGT 316
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 27   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 170
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 27   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 170
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/80 (23%), Positives = 29/80 (36%)
 Frame = -1

Query: 510 SLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDA 331
           S T P   A P  L +     + + +     +   +PP     + R K   +PSA   DA
Sbjct: 80  SPTDPDKRAIPSLLDIRTHKPQMKDLGPQVIYPNRAPPNPSSSQNRFKRDSAPSAPARDA 139

Query: 330 ETLGTARTKLSRVPT*LTRR 271
                      + P  +TRR
Sbjct: 140 PMFRGRTISQRQAPPQITRR 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,242,080
Number of Sequences: 27780
Number of extensions: 228907
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)