Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0905
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    24   1.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    24   1.0  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.4  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 3  TMKAFIFALALACVSAV 53
          T +AFI++LAL C+ A+
Sbjct: 5  TKQAFIYSLALLCLHAI 21


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 3  TMKAFIFALALACVSAV 53
          T +AFI++LAL C+ A+
Sbjct: 5  TKQAFIYSLALLCLHAI 21


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 441 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 322
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 435 VASATTFSRASPPEAKDLRTRLKMRISP 352
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 481 SCNNYWRCQTNLQINLFGRE 540
           SCNNYW   T   +N + R+
Sbjct: 100 SCNNYW--NTKNCVNPYDRD 117


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 210 IINFSGRVTDVKADDSAPCICVVSATSAPD 299
           I+  SG V  V  D+S   +CV  A   P+
Sbjct: 240 ILENSG-VVHVAQDESTSLVCVAQACPTPE 268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 210 IINFSGRVTDVKADDSAPCICVVSATSAPD 299
           I+  SG V  V  D+S   +CV  A   P+
Sbjct: 240 ILENSG-VVHVAQDESTSLVCVAQACPTPE 268


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 451 EGDGSGSLSNDVLKGKSSGSERP 383
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +1

Query: 436 RFR-LPRRQHHCQ*HRSCNNYWRCQTNLQ 519
           +FR L  RQ H   H S  NY R    +Q
Sbjct: 187 QFRVLGHRQRHSTIHLSTGNYSRLACEIQ 215


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 495  LAMSN*PPNQSLRTRSWTSRQQLPREDP 578
            L + + PP  S  T S   +QQLP   P
Sbjct: 1263 LMLQHAPPAYSCGTVSVPQQQQLPPSSP 1290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,674
Number of Sequences: 438
Number of extensions: 2732
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)