Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0905
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    34   0.088
At1g64380.1 68414.m07296 AP2 domain-containing transcription fac...    31   0.82 
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    29   3.3  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   5.8  

>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 30/92 (32%), Positives = 38/92 (41%)
 Frame = -3

Query: 493 SYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 314
           S   S V D + +   D   S  +      +SG    Q   E   FSFS  D C   GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412

Query: 313 QD*VESGADVADTTQMQGAESSALTSVTRPEK 218
                 G+  +DT ++ G ES   T  T PEK
Sbjct: 413 ----SVGSSSSDTVKVDGKESYDETK-TSPEK 439


>At1g64380.1 68414.m07296 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 335

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 546 SNFASEEIDLEVSLTSPIVIAAPMSLTMMLSARETEAVASATT-FSRASPPEAKDLRTRL 370
           +NF+ +  ++  SL+  I+   P +L  + S     +V SATT F+  +PP    L + +
Sbjct: 10  NNFSPKISEIRASLSQIILAGGPNTLDSIFSLLTPSSVESATTSFNTHNPPPPPQLGSSV 69

Query: 369 KMR 361
            +R
Sbjct: 70  YLR 72


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 487 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 365
           CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 142 CSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 487  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 368
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,074
Number of Sequences: 28952
Number of extensions: 217324
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)