Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   8.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   8.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   8.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 172 TNGVNRPPVPYITAPPTA 119
           TN VN P     T PPTA
Sbjct: 421 TNNVNSPASMNQTPPPTA 438


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -2

Query: 193  LKPSTGATNGVNRPPVPYITAPPTAFT 113
            L P   +     +PP P   APP   T
Sbjct: 993  LIPDNPSREDCTKPPEPVTPAPPQVTT 1019


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 230 SSGCASCRYSR*AETEH 180
           S GC +C Y    E+ H
Sbjct: 33  SQGCKACGYHSPLESNH 49


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 345 RSRIGPFLFY 374
           R R+ P+LFY
Sbjct: 115 RDRVNPYLFY 124


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 184 STGATNGVNRPPVPYIT 134
           S+ + + V+  PVPY+T
Sbjct: 154 SSASRHHVDHQPVPYLT 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,745
Number of Sequences: 336
Number of extensions: 2176
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)