Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    27   1.6  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   3.8  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   3.8  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    25   5.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.0  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   6.6  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    24   8.7  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   8.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   8.7  

>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 229 LHKHTTEIYGRQHCVTVDCCCHGSPHAM 312
           L K TT  YG  HC +V C   G P  M
Sbjct: 7   LFKVTT--YGESHCKSVGCIVEGCPPGM 32


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 143 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 250
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 95 APCSFNFCSLRA 60
          +PCSF  CSLRA
Sbjct: 62 SPCSFTICSLRA 73


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 325 TSPVLTIAPGSDLFCFIWN*NA 390
           T P+ ++ P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 426 FFSHRQIY*KFKCILIPNKTEKVRSWSD 343
           FF H+++    K I   N  E++ SW D
Sbjct: 211 FFWHKEVVQPIKAIQSGNDEEEIFSWGD 238


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 187 PSTGATNGVNRPPVPYITAPPTAFTTNGS*KPHVP 83
           P+      +N+P VPY   P    + N    PH+P
Sbjct: 715 PNVQTAKYINQPGVPYSNVPVAQLSGNWQ-PPHLP 748


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 339 ENG*CLASPHGVGATMAAAVNCDTMLPAINFRSMLVQQRLCFLPL 205
           ENG  L  P G GA +A A  C  +   ++F    + +RL F P+
Sbjct: 168 ENGTKLPCPDGYGAFLATACVCSLLEIFMSFIPPRILKRL-FPPI 211


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 168 MESTDPQCHILQHRRPRLPLMAARSP 91
           M+S   Q ++L   RP LPL     P
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQP 113


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 320 HHLMAWGLPWQQQSTVTQC 264
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 101 AAISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 226
           A++S + GR C  +  W S+D +S S A  Q  G      +R
Sbjct: 281 ASVSLEGGRYCETVG-WLSIDGLSASNATRQYVGRPVTNETR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,476
Number of Sequences: 5004
Number of extensions: 32636
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)