Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981...    31   0.39 
09_04_0269 + 16265191-16265472,16265574-16266149                       28   2.8  
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    27   4.9  
01_06_0961 + 33383183-33383446,33383568-33383891,33385972-333861...    27   4.9  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   6.4  
07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090     27   6.4  
07_01_0479 + 3606663-3607448                                           27   6.4  
01_07_0172 + 41704905-41706170                                         27   8.5  

>01_01_1215 +
           9815918-9816218,9816772-9816912,9816988-9817106,
           9817922-9818191,9818330-9818369,9818519-9818616,
           9818745-9818825
          Length = 349

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 176 SRARFQLSGNSGRKHSRCCTS-ILRKFMAGSIVSQLTAAAMVAPTP*GDAKHHPFSPS 346
           S++   LS  +GRK  R C+  ++R   + SI + LT+AA+V P    D +   F PS
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRPPCGDDVRVEVFLPS 194


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 168 MESTDPQCHILQHRRPRLPLMAA 100
           M  T P C +L++ RPRLPL  A
Sbjct: 157 MARTGPLCLLLENPRPRLPLAGA 179


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 151 PVPYITAPPTAFTTNGS*KPHVP 83
           P P I  PP AF   G   PH P
Sbjct: 3   PSPEIPPPPPAFAAGGEGDPHAP 25


>01_06_0961 +
           33383183-33383446,33383568-33383891,33385972-33386130,
           33386213-33386288,33387324-33387495,33388618-33388699
          Length = 358

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 152 GSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFMAGSIVSQLTAAAMVAPTP 310
           G+ +  +G+ AR +       ++ RC  S+    M  +    L AAA+V   P
Sbjct: 29  GAAERATGAVARVRALARDSERNRRCFVSVGTGRMLAAAFESLAAAALVCMMP 81


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 GSRARFQLSGNSGRKHSRCCTS 238
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090
          Length = 530

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 75  KIKGTWGF*LPLVVNAVGGAVIYGTGGLLTP 167
           KIKG WG+ + L + AV  A+I   G L  P
Sbjct: 196 KIKGGWGWRVSLALAAVPAAII-AVGALFLP 225


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 163 VNRPPVPYITAPPTAF 116
           ++RPP+P ++APP A+
Sbjct: 148 ISRPPMPNLSAPPVAY 163


>01_07_0172 + 41704905-41706170
          Length = 421

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 364 KGPILERW*ERVMFSITSWRG 302
           KG     W +R +FS+++WRG
Sbjct: 397 KGNFFLCWQDRALFSVSAWRG 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,007,655
Number of Sequences: 37544
Number of extensions: 249816
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)